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Links missing for consensus CSVs for 326651 and 326713 #4

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julianqz opened this issue Jun 21, 2019 · 1 comment
Open

Links missing for consensus CSVs for 326651 and 326713 #4

julianqz opened this issue Jun 21, 2019 · 1 comment

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@julianqz
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Hi! Thanks for posting the dataset here. The links for "consensus CSVs" for Subjects 326651 and 326713 appear to be missing. I looked at README.md and tried deducing the links for the CSVs based on those for the JSONs, but they didn't work either:

http://burtonlab.s3.amazonaws.com/sequencing-data/hiseq_2016-supplement/326651_HC5LVBCXY_consensus_UID18-cdr3nt-90_minimal_071817.tar.gz

http://burtonlab.s3.amazonaws.com/sequencing-data/hiseq_2016-supplement/326713_HJLLNBCXY_consensus_UID18-cdr3nt-90_minimal_071817.tar.gz

It would be super helpful if the links could be fixed. Thanks!

@briney
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briney commented Jun 25, 2019

The problem isn't that the links are incorrect, it's that I inadvertently shut down an AWS instance before backing up the annotated CSV data to S3 (we primarily used the JSON data, not the CSVs for analysis). I can reprocess, but it's going to take some time. If your needs are more urgent, all of the data found in the CSVs is also in the JSON files (the JSON output is far more detailed), or you can annotate the consensus FASTAs using abstar to recreate the CSV output.

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