diff --git a/WGS_pipeline/guide_mutation_binary.wdl b/WGS_pipeline/guide_mutation_binary.wdl index b9118ec0..df53e8c9 100644 --- a/WGS_pipeline/guide_mutation_binary.wdl +++ b/WGS_pipeline/guide_mutation_binary.wdl @@ -1,4 +1,4 @@ -version 1.1 +version 1.0 workflow run_guide_mutation { input { @@ -78,6 +78,8 @@ task guide_mutation { --format ~{bcftools_format} \ ~{vcf} > tkov3_~{sample_id}.bed + touch "~{sample_id}_avana_mut_binary.csv" "~{sample_id}_humagne_mut_binary.csv" "~{sample_id}_ky_mut_binary.csv" "~{sample_id}_brunello_mut_binary.csv" "~{sample_id}_tkov3_mut_binary.csv" + python -u /install/depmapomics/tasks/map_to_guides.py \ --sample_id ~{sample_id} \ --bed_filenames 'avana_~{sample_id}.bed,humagne_~{sample_id}.bed,ky_~{sample_id}.bed,brunello_~{sample_id}.bed,tkov3_~{sample_id}.bed'\