From 1825c44cb46ffa0fb111ac95f318bc97f86d74fb Mon Sep 17 00:00:00 2001 From: Rebecca Asch Date: Mon, 9 Sep 2024 13:51:18 -0400 Subject: [PATCH] get path right --- scripts/variantstore/docs/aou/AOU_DELIVERABLES.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/variantstore/docs/aou/AOU_DELIVERABLES.md b/scripts/variantstore/docs/aou/AOU_DELIVERABLES.md index b222489f621..21f44c55a61 100644 --- a/scripts/variantstore/docs/aou/AOU_DELIVERABLES.md +++ b/scripts/variantstore/docs/aou/AOU_DELIVERABLES.md @@ -94,7 +94,7 @@ The Variants team currently has the following VDS internal sign-off protocol: 1. Generate a VDS for the candidate callset into the "delivery" bucket. -1. Open up the VDS in a [beefy](/scripts/variantstore/docs/vds/cluster/AoU%20VDS%20Cluster%20Configuration.md) notebook and confirm the "shape" looks right. +1. Open up the VDS in a [beefy](vds/cluster/AoU%20VDS%20Cluster%20Configuration.md) notebook and confirm the "shape" looks right. 1. Run `GvsPrepareRangesCallset.wdl` to generate a prepare table of VET data 1. Run `GvsCallsetStatistics.wdl` to generate callset statistics for the candidate callset using the prepare VET created in the preceding step 1. Copy the output of `GvsCallsetStatistics.wdl` into the "delivery" bucket.