From f42b7f721587c9fc443506545176ecfa13d65c27 Mon Sep 17 00:00:00 2001 From: Chris Norman Date: Wed, 4 Sep 2024 15:56:15 -0400 Subject: [PATCH] Update the large test CRAM files to CRAM v3.0. (#8832) --- .../hellbender/GATKBaseTest.java | 2 +- .../PrintFileDiagnosticsIntegrationTest.java | 5 +- .../engine/CRAMSupportIntegrationTest.java | 86 +- .../tools/PrintReadsIntegrationTest.java | 4 +- .../CEUTrio.HiSeq.WGS.b37.NA12878.20.21.txt | 1794 ++++++++--------- ...q.WGS.b37.NA12878.20.21.v3.0.samtools.cram | 3 + ....b37.NA12878.20.21.v3.0.samtools.cram.crai | 3 + 7 files changed, 901 insertions(+), 996 deletions(-) create mode 100644 src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram create mode 100644 src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai diff --git a/src/test/java/org/broadinstitute/hellbender/GATKBaseTest.java b/src/test/java/org/broadinstitute/hellbender/GATKBaseTest.java index e3da55c0299..e44ee651738 100644 --- a/src/test/java/org/broadinstitute/hellbender/GATKBaseTest.java +++ b/src/test/java/org/broadinstitute/hellbender/GATKBaseTest.java @@ -74,7 +74,7 @@ public abstract class GATKBaseTest extends BaseTest { // ~600,000 reads from chromosomes 20 and 21 of an NA12878 WGS bam aligned to b37, plus ~50,000 unmapped reads public static final String NA12878_20_21_WGS_bam = largeFileTestDir + "CEUTrio.HiSeq.WGS.b37.NA12878.20.21.bam"; public static final String NA12878_20_21_WGS_mmp2_bam = largeFileTestDir + "CEUTrio.HiSeq.WGS.b37.NA12878.20.21.mmp2.bam"; - public static final String NA12878_20_21_WGS_cram = largeFileTestDir + "CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram"; + public static final String NA12878_20_21_WGS_cram = largeFileTestDir + "CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram"; public static final String NA12878_20_21_covered_regions = publicTestDir + "wgs_calling_regions.v1.chr20_chr21.interval_list"; diff --git a/src/test/java/org/broadinstitute/hellbender/PrintFileDiagnosticsIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/PrintFileDiagnosticsIntegrationTest.java index e03a36fe5c6..bb4587c6b98 100644 --- a/src/test/java/org/broadinstitute/hellbender/PrintFileDiagnosticsIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/PrintFileDiagnosticsIntegrationTest.java @@ -16,7 +16,10 @@ public class PrintFileDiagnosticsIntegrationTest extends CommandLineProgramTest public Object[][] getFileDiagnosticsTestCases() { return new Object[][]{ { - "src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram", + //this pathname is embedded in the diagnostics output file, so we use a relative pathname + // instead of the named constant NA12878_20_21_WGS_cram in order to avoid test failures + // caused by the full pathname varying in different environments + "src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram", List.of(Pair.of("count-limit", "10")), "src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.txt" }, diff --git a/src/test/java/org/broadinstitute/hellbender/engine/CRAMSupportIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/engine/CRAMSupportIntegrationTest.java index 2cc157a1b62..9aeb6d34d72 100644 --- a/src/test/java/org/broadinstitute/hellbender/engine/CRAMSupportIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/engine/CRAMSupportIntegrationTest.java @@ -2,14 +2,10 @@ import com.google.common.jimfs.Configuration; import com.google.common.jimfs.Jimfs; -import htsjdk.samtools.SAMRecord; -import htsjdk.samtools.SAMRecordIterator; -import htsjdk.samtools.SamFiles; -import htsjdk.samtools.SamReader; -import htsjdk.samtools.SamReaderFactory; -import htsjdk.samtools.ValidationStringency; -import htsjdk.samtools.util.CloseableIterator; +import htsjdk.samtools.*; +import htsjdk.samtools.cram.ref.ReferenceSource; import org.broadinstitute.hellbender.CommandLineProgramTest; +import org.broadinstitute.hellbender.cmdline.ReadFilterArgumentDefinitions; import org.broadinstitute.hellbender.cmdline.StandardArgumentDefinitions; import org.broadinstitute.hellbender.exceptions.UserException; import org.broadinstitute.hellbender.testutils.ArgumentsBuilder; @@ -40,6 +36,82 @@ public String getTestedClassName() { return PrintReads.class.getSimpleName(); } + @DataProvider(name="roundTripCRAMTests") + public Object[][] getRoundTripCRAMTests() { + return new Object[][] { + // we need to use lenient equality for this test because this bam has ~14k reads that fail full + // read equality; at least some of which are because they are unmapped/unplaced, but have cigar + // strings that both samtools and htsjdk drop when roundtripping + {NA12878_20_21_WGS_bam, b37_reference_20_21, true, false}, + // this cram is the result of converting the above bam to cram using samtools; once the file is + // converted, we can use full read equality when roundtripping through cram, so we don't need to + // be lenient + {NA12878_20_21_WGS_cram, b37_reference_20_21, false, false}, + // roundtrip a v2.1 file + { largeFileTestDir + "CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram", + b37_reference_20_21, false, false }, + }; + } + + @Test(dataProvider="roundTripCRAMTests") + public void testRoundTripToCRAM( + final String sourceBamOrCRAM, + final String reference, + final boolean lenientEquality, + final boolean emitDetail) throws IOException { + final File outputCram = createTempFile("testRoundTripCRAM", ".cram"); + + final ArgumentsBuilder args = new ArgumentsBuilder(); + args.addInput(sourceBamOrCRAM); + args.addOutput(outputCram); + args.addReference(reference); + args.add(ReadFilterArgumentDefinitions.DISABLE_TOOL_DEFAULT_READ_FILTERS, true); + + runCommandLine(args, "PrintReads"); + assertRoundTripFidelity(new File(sourceBamOrCRAM), outputCram, new File(reference), lenientEquality, emitDetail); + } + + public void assertRoundTripFidelity( + final File sourceFile, + final File targetCRAMFile, + final File referenceFile, + final boolean lenientEquality, + final boolean emitDetail) throws IOException { + try (final SamReader sourceReader = SamReaderFactory.makeDefault() + .referenceSequence(referenceFile) + .validationStringency((ValidationStringency.SILENT)) + .open(sourceFile); + final CRAMFileReader copyReader = new CRAMFileReader(targetCRAMFile, new ReferenceSource(referenceFile))) { + final SAMRecordIterator sourceIterator = sourceReader.iterator(); + final SAMRecordIterator targetIterator = copyReader.getIterator(); + + while (sourceIterator.hasNext() && targetIterator.hasNext()) { + if (lenientEquality) { + final SAMRecord sourceRec = sourceIterator.next(); + final SAMRecord targetRec = targetIterator.next(); + Assert.assertEquals(targetRec.getReadName(), sourceRec.getReadName()); + Assert.assertEquals(targetRec.getReadBases(), sourceRec.getReadBases()); + Assert.assertEquals(targetRec.getBaseQualities(), sourceRec.getBaseQualities()); + Assert.assertEquals(targetRec.getAlignmentStart(), sourceRec.getAlignmentStart()); + Assert.assertEquals(targetRec.getAlignmentEnd(), sourceRec.getAlignmentEnd()); + } else if (emitDetail) { + final SAMRecord sourceRec = sourceIterator.next(); + final SAMRecord targetRec = targetIterator.next(); + if (!sourceRec.equals(targetRec)) { + System.out.println("Difference found:"); + System.out.println(sourceRec.getSAMString()); + System.out.println(targetRec.getSAMString()); + } + Assert.assertEquals(targetRec, sourceRec); + } else { + Assert.assertEquals(targetIterator.next(), sourceIterator.next()); + } + } + Assert.assertEquals(sourceIterator.hasNext(), targetIterator.hasNext()); + } + } + + @DataProvider(name = "ReadEntireCramTestData") public Object[][] readEntireCramTestData() { final File ref = new File(hg19MiniReference); diff --git a/src/test/java/org/broadinstitute/hellbender/tools/PrintReadsIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/PrintReadsIntegrationTest.java index 028b5965efc..bb45b7b15b7 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/PrintReadsIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/PrintReadsIntegrationTest.java @@ -54,8 +54,8 @@ public void testNoConflictPG() throws IOException { public Object[][] getHttpPaths(){ final String bam = "gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam"; final String bai = "gs://hellbender/test/resources/benchmark/CEUTrio.HiSeq.WEx.b37.NA12892.bam.bai"; - final String cram = "gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram"; - final String crai = "gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram.bai"; + final String cram = "gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram"; + final String crai = "gs://hellbender/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai"; final List bamIntervals = Arrays.asList(new SimpleInterval("3",1_000_000, 1_000_001), new SimpleInterval("3", 1_000_003, 1_000_100), new SimpleInterval("20", 1_099_000, 1_100_000)); diff --git a/src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.txt b/src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.txt index 4a64d41c5b8..3f5edcffd2b 100644 --- a/src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.txt +++ b/src/test/resources/filediagnostics/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.txt @@ -1,1130 +1,967 @@ -CRAM File: src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.cram -CRAM Version: 2.1 -CRAM ID Contents: L1VzZXJzL2FraWV6dW4vSWRlYVA= +CRAM File: src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram +CRAM Version: 3.0 +CRAM ID Contents: Li4vaHRzamRrL3NyYy90ZXN0L3I= SAMFileHeader{VN=1.5, GO=none, SO=coordinate} -SAMSequenceDictionary:( sequences:2 length:111155415 md5:090fb1cdca0dabd61b568ab56e9f555f) +SAMSequenceDictionary:( sequences:2 length:111155415 md5:6105eaf82ce1eebc05f2d1d4f54c059c) SAMSequenceRecord(name=20,length=63025520,dict_index=0,assembly=null,alternate_names=[]) SAMSequenceRecord(name=21,length=48129895,dict_index=1,assembly=null,alternate_names=[]) -***Container #:1 sequenceId=SINGLE_REFERENCE: 0, start=9999902, span=11055, nRecords=10000, nBlocks=52, nBases=1010000, globalCounter=0 byteOffset=5578 +***Container #:1 sequenceId=SINGLE_REFERENCE: 0, start=9999902, span=11055, nRecords=10000, nBlocks=39, nBases=1010000, globalCounter=0 byteOffset=2106 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) 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size=300 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9868, compressed size=1713 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9868, compressed size=248 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327756, compressed size=59547 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=354284 +External Block (IN): method=GZIP, type=EXTERNAL, id=13, raw size=675, compressed size=67 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=63688, compressed size=16156 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15738, compressed size=3841 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2634 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5056 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9868, compressed size=1506 +External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=10000, compressed size=33 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1406 +External Block (TS): method=RANS, type=EXTERNAL, id=22, raw size=34300, compressed size=14924 +External Block (NP): method=GZIP, type=EXTERNAL, id=23, raw size=40000, compressed size=18200 +External Block (FN): method=RANS, type=EXTERNAL, id=26, raw size=9868, compressed size=2165 +External Block (FC): method=RANS, type=EXTERNAL, id=27, raw size=9393, compressed size=1343 +External Block (FP): method=GZIP, type=EXTERNAL, id=28, raw size=9393, compressed size=6956 +External Block (DL): method=GZIP, type=EXTERNAL, id=29, raw size=253, compressed size=59 +External Block (BA): method=RANS, type=EXTERNAL, id=30, raw size=13628, compressed size=2297 +External Block (BS): method=GZIP, type=EXTERNAL, id=31, raw size=6695, compressed size=1168 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=2606 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9868, compressed size=1478 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=867363, compressed size=44535 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9735, compressed size=1397 +External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=681, compressed size=191 +External Block (5197897): method=GZIP, type=EXTERNAL, id=5197897, raw size=168, compressed size=112 +External Block (5198170): method=GZIP, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=263635 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9868, compressed size=1168 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9473, compressed size=191 +External Block (5779539): method=RAW, type=EXTERNAL, id=5779539, raw size=8, compressed size=8 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9457, compressed size=302 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=16, compressed size=16 +External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=10302, compressed size=2039 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=1996, compressed size=1275 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9868, compressed size=246 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9868, compressed size=1713 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9868, compressed size=207 External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9868, compressed size=402 -***Container #:2 sequenceId=SINGLE_REFERENCE: 0, start=10010859, span=11595, nRecords=10000, nBlocks=52, nBases=1010000, globalCounter=10000 byteOffset=787322 +***Container #:2 sequenceId=SINGLE_REFERENCE: 0, start=10010859, span=11595, nRecords=10000, nBlocks=38, nBases=1010000, globalCounter=10000 byteOffset=817954 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) -DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) +DataSeries (NS/NS_NextFragmentReferenceSequenceID) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) -Content ID/Tag (5779571/X0:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779571) +Content ID/Tag (5779539/X0:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779539) Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787459) Content ID/Tag (5788737/XT:A) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5788737) -******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10010859, span=11595 globalRecordCounter=10000, nRecords=10000, sliceHeaderOffset=2130, sizeOfBlocks=774472, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=81fbf6a9d2418a3630500403b879d405 -Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=146, compressed size=146 +******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10010859, span=11595 globalRecordCounter=10000, nRecords=10000, sliceHeaderOffset=1657, sizeOfBlocks=752325, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=81fbf6a9d2418a3630500403b879d405 +Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=120, compressed size=120 Core block method=RAW, type=CORE, id=0, raw size=0, compressed size=0 -External Block (BF): method=RANS, type=EXTERNAL, id=0, raw size=15653, compressed size=3682 -External Block (AP): method=RANS, type=EXTERNAL, id=1, raw size=10000, compressed size=2695 -External Block (FP): method=GZIP, type=EXTERNAL, id=2, raw size=5581, compressed size=4173 -External Block (FC): method=GZIP, type=EXTERNAL, id=3, raw size=5581, compressed size=1079 -External Block (QS): method=RANS, type=EXTERNAL, id=4, raw size=1010000, compressed size=359147 -External Block (DL): method=GZIP, type=EXTERNAL, id=5, raw size=142, compressed size=36 -External Block (BA): method=RANS, type=EXTERNAL, id=6, raw size=12274, compressed size=1823 -External Block (7): method=GZIP, type=EXTERNAL, id=7, raw size=0, compressed size=20 -External Block (NF): method=GZIP, type=EXTERNAL, id=8, raw size=120, compressed size=24 -External Block (RL): method=RANS, type=EXTERNAL, id=9, raw size=10000, compressed size=36 -External Block (RG): method=RANS, type=EXTERNAL, id=10, raw size=10000, compressed size=5475 -External Block (MQ): method=GZIP, type=EXTERNAL, id=11, raw size=9880, compressed size=1443 -External Block (RN): method=GZIP, type=EXTERNAL, id=12, raw size=327845, compressed size=63910 -External Block (NP): method=GZIP, type=EXTERNAL, id=13, raw size=39040, compressed size=19684 -External Block (TS): method=RANS, type=EXTERNAL, id=14, raw size=34147, compressed size=14745 -External Block (FN): method=GZIP, type=EXTERNAL, id=15, raw size=9880, compressed size=2384 -External Block (BS): method=GZIP, type=EXTERNAL, id=16, raw size=3248, compressed size=895 -External Block (IN): method=GZIP, type=EXTERNAL, id=17, raw size=0, compressed size=20 -External Block (18): method=GZIP, type=EXTERNAL, id=18, raw size=0, compressed size=20 -External Block (MF): method=GZIP, type=EXTERNAL, id=19, raw size=9760, compressed size=1660 -External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=9760, compressed size=31 -External Block (CF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=166 -External Block (TL): method=GZIP, type=EXTERNAL, id=24, raw size=10000, compressed size=2830 -External Block (RI): method=RANS, type=EXTERNAL, id=25, raw size=0, compressed size=0 -External Block (RS): method=GZIP, type=EXTERNAL, id=26, raw size=0, compressed size=20 -External Block (SC): method=GZIP, type=EXTERNAL, id=27, raw size=62609, compressed size=16876 -External Block (HC): method=GZIP, type=EXTERNAL, id=28, raw size=0, compressed size=20 -External Block (PD): method=GZIP, type=EXTERNAL, id=29, raw size=0, compressed size=20 -External Block (4279651): method=RANS, type=EXTERNAL, id=4279651, raw size=9880, compressed size=1177 -External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=872814, compressed size=42144 -External Block (5063770): method=GZIP, type=EXTERNAL, id=5063770, raw size=54849, compressed size=11566 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9760, compressed size=1008 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9880, compressed size=1376 -External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=128, compressed size=61 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=32, compressed size=37 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=207267 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9880, compressed size=871 -External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=10, compressed size=31 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9652, compressed size=242 -External Block (5779571): method=GZIP, type=EXTERNAL, id=5779571, raw size=16, compressed size=36 -External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=14, compressed size=35 -External Block (5779811): method=GZIP, type=EXTERNAL, id=5779811, raw size=9617, compressed size=391 -External Block (5779827): method=GZIP, type=EXTERNAL, id=5779827, raw size=16, compressed size=36 -External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=4948, compressed size=1342 -External Block (5784419): method=RANS, type=EXTERNAL, id=5784419, raw size=2095, compressed size=1397 -External Block (5785443): method=RANS, type=EXTERNAL, id=5785443, raw size=9880, compressed size=191 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9880, compressed size=1298 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9880, compressed size=169 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327845, compressed size=60105 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=359147 +External Block (IN): method=GZIP, type=EXTERNAL, id=13, raw size=180, compressed size=33 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=62609, compressed size=16017 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15653, compressed size=3739 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2695 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5054 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9880, compressed size=1115 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1400 +External Block (TS): method=RANS, type=EXTERNAL, id=22, raw size=34387, compressed size=14824 +External Block (NP): method=GZIP, type=EXTERNAL, id=23, raw size=40000, compressed size=18282 +External Block (FN): method=RANS, type=EXTERNAL, id=26, raw size=9880, compressed size=1816 +External Block (FC): method=RANS, type=EXTERNAL, id=27, raw size=5521, compressed size=882 +External Block (FP): method=GZIP, type=EXTERNAL, id=28, raw size=5521, compressed size=3987 +External Block (DL): method=RANS, type=EXTERNAL, id=29, raw size=142, compressed size=36 +External Block (BA): method=RANS, type=EXTERNAL, id=30, raw size=12154, compressed size=1790 +External Block (BS): method=RANS, type=EXTERNAL, id=31, raw size=3248, compressed size=727 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=2206 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9880, compressed size=1177 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=881371, compressed size=42157 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9760, compressed size=1008 +External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=128, compressed size=63 +External Block (5197897): method=RAW, type=EXTERNAL, id=5197897, raw size=32, compressed size=32 +External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=207285 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9880, compressed size=871 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9662, compressed size=248 +External Block (5779539): method=RAW, type=EXTERNAL, id=5779539, raw size=16, compressed size=16 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9631, compressed size=385 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=16, compressed size=16 +External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=4948, compressed size=1308 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=2095, compressed size=1363 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9880, compressed size=171 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9880, compressed size=1298 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9880, compressed size=160 External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9880, compressed size=335 -***Container #:3 sequenceId=SINGLE_REFERENCE: 0, start=10022353, span=10302, nRecords=10000, nBlocks=51, nBases=1010000, globalCounter=20000 byteOffset=1563946 +***Container #:3 sequenceId=SINGLE_REFERENCE: 0, start=10022353, span=10302, nRecords=10000, nBlocks=39, nBases=1010000, globalCounter=20000 byteOffset=1571962 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) -Content ID/Tag (5779571/X0:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779571) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) +Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) +Content ID/Tag (5779539/X0:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779539) Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787459) Content ID/Tag (5788737/XT:A) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5788737) -******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10022353, span=10302 globalRecordCounter=20000, nRecords=10000, sliceHeaderOffset=1706, sizeOfBlocks=740499, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=f5905b31729d54a3d420d5fc7cc8f3b2 -Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=143, compressed size=143 +******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10022353, span=10302 globalRecordCounter=20000, nRecords=10000, sliceHeaderOffset=1404, sizeOfBlocks=720981, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=f5905b31729d54a3d420d5fc7cc8f3b2 +Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=122, compressed size=122 Core block method=RAW, type=CORE, id=0, raw size=0, compressed size=0 -External Block (BF): method=RANS, type=EXTERNAL, id=0, raw size=15782, compressed size=3756 -External Block (AP): method=RANS, type=EXTERNAL, id=1, raw size=10000, compressed size=2539 -External Block (FP): method=GZIP, type=EXTERNAL, id=2, raw size=4826, compressed size=3570 -External Block (FC): method=GZIP, type=EXTERNAL, id=3, raw size=4826, compressed size=925 -External Block (QS): method=RANS, type=EXTERNAL, id=4, raw size=1010000, compressed size=355563 -External Block (DL): method=GZIP, type=EXTERNAL, id=5, raw size=29, compressed size=40 -External Block (BA): method=RANS, type=EXTERNAL, id=6, raw size=12258, compressed size=1697 -External Block (7): method=GZIP, type=EXTERNAL, id=7, raw size=0, compressed size=20 -External Block (NF): method=GZIP, type=EXTERNAL, id=8, raw size=118, compressed size=24 -External Block (RL): method=RANS, type=EXTERNAL, id=9, raw size=10000, compressed size=36 -External Block (RG): method=RANS, type=EXTERNAL, id=10, raw size=10000, compressed size=5436 -External Block (MQ): method=GZIP, type=EXTERNAL, id=11, raw size=9882, compressed size=1041 -External Block (RN): method=GZIP, type=EXTERNAL, id=12, raw size=327557, compressed size=63397 -External Block (NP): method=GZIP, type=EXTERNAL, id=13, raw size=39056, compressed size=19239 -External Block (TS): method=RANS, type=EXTERNAL, id=14, raw size=34215, compressed size=14667 -External Block (FN): method=GZIP, type=EXTERNAL, id=15, raw size=9882, compressed size=2242 -External Block (BS): method=GZIP, type=EXTERNAL, id=16, raw size=2899, compressed size=759 -External Block (IN): method=GZIP, type=EXTERNAL, id=17, raw size=0, compressed size=20 -External Block (18): method=GZIP, type=EXTERNAL, id=18, raw size=0, compressed size=20 -External Block (MF): method=GZIP, type=EXTERNAL, id=19, raw size=9764, compressed size=1676 -External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=9764, compressed size=41 -External Block (CF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=164 -External Block (TL): method=GZIP, type=EXTERNAL, id=24, raw size=10000, compressed size=2637 -External Block (RI): method=RANS, type=EXTERNAL, id=25, raw size=0, compressed size=0 -External Block (RS): method=GZIP, type=EXTERNAL, id=26, raw size=0, compressed size=20 -External Block (SC): method=GZIP, type=EXTERNAL, id=27, raw size=48299, compressed size=13163 -External Block (HC): method=GZIP, type=EXTERNAL, id=28, raw size=0, compressed size=20 -External Block (PD): method=GZIP, type=EXTERNAL, id=29, raw size=0, compressed size=20 -External Block (4279651): method=RANS, type=EXTERNAL, id=4279651, raw size=9882, compressed size=700 -External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=849762, compressed size=32188 -External Block (5063770): method=GZIP, type=EXTERNAL, id=5063770, raw size=54093, compressed size=9866 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9763, compressed size=554 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9882, compressed size=1286 -External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=127, compressed size=68 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=24, compressed size=36 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=198619 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9882, compressed size=557 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9642, compressed size=100 -External Block (5779571): method=GZIP, type=EXTERNAL, id=5779571, raw size=4, compressed size=24 -External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=5, compressed size=25 -External Block (5779811): method=RANS, type=EXTERNAL, id=5779811, raw size=9629, compressed size=83 -External Block (5779827): method=GZIP, type=EXTERNAL, id=5779827, raw size=10, compressed size=30 -External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=476, compressed size=230 -External Block (5784419): method=RANS, type=EXTERNAL, id=5784419, raw size=1608, compressed size=1047 -External Block (5785443): method=RANS, type=EXTERNAL, id=5785443, raw size=9882, compressed size=195 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9882, compressed size=1198 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9882, compressed size=166 -External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9882, compressed size=263 - -***Container #:4 sequenceId=SINGLE_REFERENCE: 0, start=10032556, span=10955, nRecords=10000, nBlocks=49, nBases=1010000, globalCounter=30000 byteOffset=2306174 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327557, compressed size=59550 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=355563 +External Block (IN): method=GZIP, type=EXTERNAL, id=13, raw size=378, compressed size=54 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=48299, compressed size=12405 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15782, compressed size=3825 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2539 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5057 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9882, compressed size=670 +External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=10000, compressed size=33 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1399 +External Block (TS): method=RANS, type=EXTERNAL, id=22, raw size=34451, compressed size=14753 +External Block (NP): method=GZIP, type=EXTERNAL, id=23, raw size=40000, compressed size=18211 +External Block (FN): method=RANS, type=EXTERNAL, id=26, raw size=9882, compressed size=1745 +External Block (FC): method=RANS, type=EXTERNAL, id=27, raw size=4642, compressed size=732 +External Block (FP): method=GZIP, type=EXTERNAL, id=28, raw size=4642, compressed size=3508 +External Block (DL): method=RAW, type=EXTERNAL, id=29, raw size=29, compressed size=29 +External Block (BA): method=RANS, type=EXTERNAL, id=30, raw size=11977, compressed size=1630 +External Block (BS): method=RANS, type=EXTERNAL, id=31, raw size=2899, compressed size=628 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=1991 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9882, compressed size=700 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=858093, compressed size=32203 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9763, compressed size=554 +External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=127, compressed size=69 +External Block (5197897): method=RAW, type=EXTERNAL, id=5197897, raw size=24, compressed size=24 +External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=198635 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9882, compressed size=557 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9642, compressed size=97 +External Block (5779539): method=RAW, type=EXTERNAL, id=5779539, raw size=4, compressed size=4 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9634, compressed size=104 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=10, compressed size=10 +External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=476, compressed size=227 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=1608, compressed size=1017 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9882, compressed size=174 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9882, compressed size=1264 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9882, compressed size=156 +External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9882, compressed size=279 + +***Container #:4 sequenceId=SINGLE_REFERENCE: 0, start=10032556, span=10955, nRecords=10000, nBlocks=37, nBases=1010000, globalCounter=30000 byteOffset=2294374 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) -DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) +DataSeries (NS/NS_NextFragmentReferenceSequenceID) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) +Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) +Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787459) Content ID/Tag (5788737/XT:A) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5788737) -******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10032556, span=10955 globalRecordCounter=30000, nRecords=10000, sliceHeaderOffset=1898, sizeOfBlocks=757971, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=37a6fb3ef0ea6760259426c3fcc205f8 -Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=135, compressed size=135 +******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10032556, span=10955 globalRecordCounter=30000, nRecords=10000, sliceHeaderOffset=1676, sizeOfBlocks=737653, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=37a6fb3ef0ea6760259426c3fcc205f8 +Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=117, compressed size=117 Core block method=RAW, type=CORE, id=0, raw size=0, compressed size=0 -External Block (BF): method=RANS, type=EXTERNAL, id=0, raw size=15679, compressed size=3682 -External Block (AP): method=RANS, type=EXTERNAL, id=1, raw size=10000, compressed size=2614 -External Block (FP): method=GZIP, type=EXTERNAL, id=2, raw size=5686, compressed size=3963 -External Block (FC): method=GZIP, type=EXTERNAL, id=3, raw size=5686, compressed size=1100 -External Block (QS): method=RANS, type=EXTERNAL, id=4, raw size=1010000, compressed size=356772 -External Block (DL): method=GZIP, type=EXTERNAL, id=5, raw size=159, compressed size=43 -External Block (BA): method=RANS, type=EXTERNAL, id=6, raw size=12340, compressed size=1837 -External Block (7): method=GZIP, type=EXTERNAL, id=7, raw size=0, compressed size=20 -External Block (NF): method=GZIP, type=EXTERNAL, id=8, raw size=113, compressed size=24 -External Block (RL): method=RANS, type=EXTERNAL, id=9, raw size=10000, compressed size=36 -External Block (RG): method=RANS, type=EXTERNAL, id=10, raw size=10000, compressed size=5477 -External Block (MQ): method=GZIP, type=EXTERNAL, id=11, raw size=9887, compressed size=1080 -External Block (RN): method=GZIP, type=EXTERNAL, id=12, raw size=327623, compressed size=63794 -External Block (NP): method=GZIP, type=EXTERNAL, id=13, raw size=39096, compressed size=19561 -External Block (TS): method=RANS, type=EXTERNAL, id=14, raw size=34171, compressed size=14889 -External Block (FN): method=GZIP, type=EXTERNAL, id=15, raw size=9887, compressed size=2297 -External Block (BS): method=GZIP, type=EXTERNAL, id=16, raw size=2842, compressed size=760 -External Block (IN): method=GZIP, type=EXTERNAL, id=17, raw size=0, compressed size=20 -External Block (18): method=GZIP, type=EXTERNAL, id=18, raw size=0, compressed size=20 -External Block (MF): method=GZIP, type=EXTERNAL, id=19, raw size=9774, compressed size=1668 -External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=9774, compressed size=31 -External Block (CF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=160 -External Block (TL): method=GZIP, type=EXTERNAL, id=24, raw size=10000, compressed size=2642 -External Block (RI): method=RANS, type=EXTERNAL, id=25, raw size=0, compressed size=0 -External Block (RS): method=GZIP, type=EXTERNAL, id=26, raw size=0, compressed size=20 -External Block (SC): method=GZIP, type=EXTERNAL, id=27, raw size=53505, compressed size=14442 -External Block (HC): method=GZIP, type=EXTERNAL, id=28, raw size=0, compressed size=20 -External Block (PD): method=GZIP, type=EXTERNAL, id=29, raw size=0, compressed size=20 -External Block (4279651): method=RANS, type=EXTERNAL, id=4279651, raw size=9887, compressed size=727 -External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=874446, compressed size=39956 -External Block (5063770): method=GZIP, type=EXTERNAL, id=5063770, raw size=53925, compressed size=10267 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9774, compressed size=648 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9887, compressed size=1436 -External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=1101, compressed size=312 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=176, compressed size=94 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=203014 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9887, compressed size=581 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9608, compressed size=54 -External Block (5779811): method=RANS, type=EXTERNAL, id=5779811, raw size=9605, compressed size=53 -External Block (5779827): method=GZIP, type=EXTERNAL, id=5779827, raw size=4, compressed size=24 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327623, compressed size=59981 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=356772 +External Block (IN): method=GZIP, type=EXTERNAL, id=13, raw size=1053, compressed size=108 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=53505, compressed size=13669 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15679, compressed size=3736 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2614 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5057 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9887, compressed size=757 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1395 +External Block (TS): method=RANS, type=EXTERNAL, id=22, raw size=34397, compressed size=14904 +External Block (NP): method=GZIP, type=EXTERNAL, id=23, raw size=40000, compressed size=18300 +External Block (FN): method=RANS, type=EXTERNAL, id=26, raw size=9887, compressed size=1839 +External Block (FC): method=RANS, type=EXTERNAL, id=27, raw size=5059, compressed size=891 +External Block (FP): method=GZIP, type=EXTERNAL, id=28, raw size=5059, compressed size=3804 +External Block (DL): method=GZIP, type=EXTERNAL, id=29, raw size=159, compressed size=53 +External Block (BA): method=RANS, type=EXTERNAL, id=30, raw size=11500, compressed size=1632 +External Block (BS): method=RANS, type=EXTERNAL, id=31, raw size=2842, compressed size=630 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=2100 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9887, compressed size=727 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=883019, compressed size=39970 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9774, compressed size=648 +External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=1101, compressed size=360 +External Block (5197897): method=GZIP, type=EXTERNAL, id=5197897, raw size=176, compressed size=95 +External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=203031 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9887, compressed size=581 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9608, compressed size=71 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9605, compressed size=64 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=4, compressed size=4 External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=369, compressed size=184 -External Block (5784419): method=RANS, type=EXTERNAL, id=5784419, raw size=1780, compressed size=1195 -External Block (5785443): method=GZIP, type=EXTERNAL, id=5785443, raw size=9887, compressed size=248 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9887, compressed size=1209 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9887, compressed size=197 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=1780, compressed size=1165 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9887, compressed size=209 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9887, compressed size=1289 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9887, compressed size=183 External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9887, compressed size=268 -***Container #:5 sequenceId=SINGLE_REFERENCE: 0, start=10043410, span=11007, nRecords=10000, nBlocks=50, nBases=1010000, globalCounter=40000 byteOffset=3066066 +***Container #:5 sequenceId=SINGLE_REFERENCE: 0, start=10043410, span=11007, nRecords=10000, nBlocks=37, nBases=1010000, globalCounter=40000 byteOffset=3033730 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) -DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) +DataSeries (NS/NS_NextFragmentReferenceSequenceID) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) +Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787459) Content ID/Tag (5788737/XT:A) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5788737) -******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10043410, span=11007 globalRecordCounter=40000, nRecords=10000, sliceHeaderOffset=1633, sizeOfBlocks=756454, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=0e11679c61b424faa02812203fa58bae -Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=139, compressed size=139 +******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10043410, span=11007 globalRecordCounter=40000, nRecords=10000, sliceHeaderOffset=1386, sizeOfBlocks=736607, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=0e11679c61b424faa02812203fa58bae +Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=117, compressed size=117 Core block method=RAW, type=CORE, id=0, raw size=0, compressed size=0 -External Block (BF): method=RANS, type=EXTERNAL, id=0, raw size=15684, compressed size=3634 -External Block (AP): method=RANS, type=EXTERNAL, id=1, raw size=10000, compressed size=2612 -External Block (FP): method=GZIP, type=EXTERNAL, id=2, raw size=4537, compressed size=3365 -External Block (FC): method=GZIP, type=EXTERNAL, id=3, raw size=4537, compressed size=845 -External Block (QS): method=RANS, type=EXTERNAL, id=4, raw size=1010000, compressed size=356908 -External Block (DL): method=GZIP, type=EXTERNAL, id=5, raw size=70, compressed size=35 -External Block (BA): method=RANS, type=EXTERNAL, id=6, raw size=9705, compressed size=1555 -External Block (7): method=GZIP, type=EXTERNAL, id=7, raw size=0, compressed size=20 -External Block (NF): method=GZIP, type=EXTERNAL, id=8, raw size=96, compressed size=24 -External Block (RL): method=RANS, type=EXTERNAL, id=9, raw size=10000, compressed size=36 -External Block (RG): method=RANS, type=EXTERNAL, id=10, raw size=10000, compressed size=5492 -External Block (MQ): method=GZIP, type=EXTERNAL, id=11, raw size=9904, compressed size=945 -External Block (RN): method=GZIP, type=EXTERNAL, id=12, raw size=327698, compressed size=64155 -External Block (NP): method=GZIP, type=EXTERNAL, id=13, raw size=39232, compressed size=19729 -External Block (TS): method=RANS, type=EXTERNAL, id=14, raw size=34272, compressed size=14742 -External Block (FN): method=GZIP, type=EXTERNAL, id=15, raw size=9904, compressed size=2240 -External Block (BS): method=GZIP, type=EXTERNAL, id=16, raw size=2667, compressed size=750 -External Block (IN): method=GZIP, type=EXTERNAL, id=17, raw size=0, compressed size=20 -External Block (18): method=GZIP, type=EXTERNAL, id=18, raw size=0, compressed size=20 -External Block (MF): method=GZIP, type=EXTERNAL, id=19, raw size=9808, compressed size=1688 -External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=9808, compressed size=31 -External Block (CF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=150 -External Block (TL): method=GZIP, type=EXTERNAL, id=24, raw size=10000, compressed size=2625 -External Block (RI): method=RANS, type=EXTERNAL, id=25, raw size=0, compressed size=0 -External Block (RS): method=GZIP, type=EXTERNAL, id=26, raw size=0, compressed size=20 -External Block (SC): method=GZIP, type=EXTERNAL, id=27, raw size=54538, compressed size=14557 -External Block (HC): method=GZIP, type=EXTERNAL, id=28, raw size=0, compressed size=20 -External Block (PD): method=GZIP, type=EXTERNAL, id=29, raw size=0, compressed size=20 -External Block (4279651): method=RANS, type=EXTERNAL, id=4279651, raw size=9904, compressed size=648 -External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=873120, compressed size=38455 -External Block (5063770): method=GZIP, type=EXTERNAL, id=5063770, raw size=53836, compressed size=9991 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9808, compressed size=503 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9904, compressed size=1184 -External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=207, compressed size=83 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=68, compressed size=46 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=205169 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9904, compressed size=505 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9701, compressed size=64 -External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=2, compressed size=22 -External Block (5779811): method=RANS, type=EXTERNAL, id=5779811, raw size=9697, compressed size=86 -External Block (5779827): method=GZIP, type=EXTERNAL, id=5779827, raw size=2, compressed size=22 -External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=293, compressed size=156 -External Block (5784419): method=RANS, type=EXTERNAL, id=5784419, raw size=1838, compressed size=1217 -External Block (5785443): method=RANS, type=EXTERNAL, id=5785443, raw size=9904, compressed size=103 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9904, compressed size=1127 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9904, compressed size=85 -External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9904, compressed size=231 - -***Container #:6 sequenceId=SINGLE_REFERENCE: 0, start=10054316, span=11415, nRecords=10000, nBlocks=50, nBases=1010000, globalCounter=50000 byteOffset=3824176 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327698, compressed size=60264 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=356908 +External Block (IN): method=RAW, type=EXTERNAL, id=13, raw size=3, compressed size=3 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=54538, compressed size=13780 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15684, compressed size=3683 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2612 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5057 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9904, compressed size=603 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1382 +External Block (TS): method=RANS, type=EXTERNAL, id=22, raw size=34464, compressed size=14793 +External Block (NP): method=GZIP, type=EXTERNAL, id=23, raw size=40000, compressed size=18341 +External Block (FN): method=RANS, type=EXTERNAL, id=26, raw size=9904, compressed size=1758 +External Block (FC): method=RANS, type=EXTERNAL, id=27, raw size=4536, compressed size=667 +External Block (FP): method=GZIP, type=EXTERNAL, id=28, raw size=4536, compressed size=3374 +External Block (DL): method=GZIP, type=EXTERNAL, id=29, raw size=70, compressed size=37 +External Block (BA): method=RANS, type=EXTERNAL, id=30, raw size=9703, compressed size=1553 +External Block (BS): method=RANS, type=EXTERNAL, id=31, raw size=2667, compressed size=618 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=1970 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9904, compressed size=648 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=881680, compressed size=38472 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9808, compressed size=503 +External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=207, compressed size=87 +External Block (5197897): method=GZIP, type=EXTERNAL, id=5197897, raw size=68, compressed size=47 +External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=205185 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9904, compressed size=505 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9701, compressed size=86 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9699, compressed size=111 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=2, compressed size=2 +External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=293, compressed size=155 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=1838, compressed size=1188 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9904, compressed size=93 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9904, compressed size=1234 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9904, compressed size=87 +External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9904, compressed size=245 + +***Container #:6 sequenceId=SINGLE_REFERENCE: 0, start=10054316, span=11415, nRecords=10000, nBlocks=37, nBases=1010000, globalCounter=50000 byteOffset=3771750 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) -DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) +DataSeries (NS/NS_NextFragmentReferenceSequenceID) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) +Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787459) Content ID/Tag (5788737/XT:A) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5788737) -******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10054316, span=11415 globalRecordCounter=50000, nRecords=10000, sliceHeaderOffset=1297, sizeOfBlocks=763062, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=ee7915573d77df4b3fab9b1fa466ee53 -Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=139, compressed size=139 +******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10054316, span=11415 globalRecordCounter=50000, nRecords=10000, sliceHeaderOffset=1077, sizeOfBlocks=743844, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=ee7915573d77df4b3fab9b1fa466ee53 +Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=117, compressed size=117 Core block method=RAW, type=CORE, id=0, raw size=0, compressed size=0 -External Block (BF): method=RANS, type=EXTERNAL, id=0, raw size=15588, compressed size=3587 -External Block (AP): method=RANS, type=EXTERNAL, id=1, raw size=10000, compressed size=2654 -External Block (FP): method=GZIP, type=EXTERNAL, id=2, raw size=4258, compressed size=3142 -External Block (FC): method=GZIP, type=EXTERNAL, id=3, raw size=4258, compressed size=822 -External Block (QS): method=RANS, type=EXTERNAL, id=4, raw size=1010000, compressed size=359046 -External Block (DL): method=GZIP, type=EXTERNAL, id=5, raw size=30, compressed size=41 -External Block (BA): method=RANS, type=EXTERNAL, id=6, raw size=8898, compressed size=1410 -External Block (7): method=GZIP, type=EXTERNAL, id=7, raw size=0, compressed size=20 -External Block (NF): method=GZIP, type=EXTERNAL, id=8, raw size=88, compressed size=24 -External Block (RL): method=RANS, type=EXTERNAL, id=9, raw size=10000, compressed size=36 -External Block (RG): method=RANS, type=EXTERNAL, id=10, raw size=10000, compressed size=5497 -External Block (MQ): method=GZIP, type=EXTERNAL, id=11, raw size=9912, compressed size=996 -External Block (RN): method=GZIP, type=EXTERNAL, id=12, raw size=327729, compressed size=64169 -External Block (NP): method=GZIP, type=EXTERNAL, id=13, raw size=39296, compressed size=20037 -External Block (TS): method=RANS, type=EXTERNAL, id=14, raw size=34403, compressed size=14806 -External Block (FN): method=GZIP, type=EXTERNAL, id=15, raw size=9912, compressed size=2222 -External Block (BS): method=GZIP, type=EXTERNAL, id=16, raw size=2353, compressed size=700 -External Block (IN): method=GZIP, type=EXTERNAL, id=17, raw size=0, compressed size=20 -External Block (18): method=GZIP, type=EXTERNAL, id=18, raw size=0, compressed size=20 -External Block (MF): method=GZIP, type=EXTERNAL, id=19, raw size=9824, compressed size=1685 -External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=9824, compressed size=31 -External Block (CF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=140 -External Block (TL): method=GZIP, type=EXTERNAL, id=24, raw size=10000, compressed size=2525 -External Block (RI): method=RANS, type=EXTERNAL, id=25, raw size=0, compressed size=0 -External Block (RS): method=GZIP, type=EXTERNAL, id=26, raw size=0, compressed size=20 -External Block (SC): method=GZIP, type=EXTERNAL, id=27, raw size=56785, compressed size=15253 -External Block (HC): method=GZIP, type=EXTERNAL, id=28, raw size=0, compressed size=20 -External Block (PD): method=GZIP, type=EXTERNAL, id=29, raw size=0, compressed size=20 -External Block (4279651): method=RANS, type=EXTERNAL, id=4279651, raw size=9912, compressed size=652 -External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=892296, compressed size=39850 -External Block (5063770): method=GZIP, type=EXTERNAL, id=5063770, raw size=52971, compressed size=9340 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9823, compressed size=527 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9912, compressed size=1006 -External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=19, compressed size=39 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=8, compressed size=28 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=208578 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9912, compressed size=505 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9724, compressed size=78 -External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=1, compressed size=21 -External Block (5779811): method=RANS, type=EXTERNAL, id=5779811, raw size=9718, compressed size=102 -External Block (5779827): method=GZIP, type=EXTERNAL, id=5779827, raw size=6, compressed size=26 -External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=506, compressed size=223 -External Block (5784419): method=RANS, type=EXTERNAL, id=5784419, raw size=1899, compressed size=1273 -External Block (5785443): method=RANS, type=EXTERNAL, id=5785443, raw size=9912, compressed size=77 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9912, compressed size=979 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9912, compressed size=74 -External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9912, compressed size=223 - -***Container #:7 sequenceId=SINGLE_REFERENCE: 0, start=10065630, span=11707, nRecords=10000, nBlocks=49, nBases=1010000, globalCounter=60000 byteOffset=4588558 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327729, compressed size=60304 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=359046 +External Block (IN): method=RAW, type=EXTERNAL, id=13, raw size=3, compressed size=3 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=56785, compressed size=14479 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15588, compressed size=3650 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2654 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5058 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9912, compressed size=613 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1374 +External Block (TS): method=RANS, type=EXTERNAL, id=22, raw size=34579, compressed size=14838 +External Block (NP): method=GZIP, type=EXTERNAL, id=23, raw size=40000, compressed size=18505 +External Block (FN): method=RANS, type=EXTERNAL, id=26, raw size=9912, compressed size=1716 +External Block (FC): method=RANS, type=EXTERNAL, id=27, raw size=4257, compressed size=645 +External Block (FP): method=GZIP, type=EXTERNAL, id=28, raw size=4257, compressed size=3143 +External Block (DL): method=RAW, type=EXTERNAL, id=29, raw size=30, compressed size=30 +External Block (BA): method=RANS, type=EXTERNAL, id=30, raw size=8896, compressed size=1410 +External Block (BS): method=RANS, type=EXTERNAL, id=31, raw size=2353, compressed size=567 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=1863 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9912, compressed size=652 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=901044, compressed size=39864 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9823, compressed size=527 +External Block (5194586): method=RAW, type=EXTERNAL, id=5194586, raw size=19, compressed size=19 +External Block (5197897): method=RAW, type=EXTERNAL, id=5197897, raw size=8, compressed size=8 +External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=208600 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9912, compressed size=505 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9724, compressed size=86 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9719, compressed size=109 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=6, compressed size=6 +External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=506, compressed size=217 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=1899, compressed size=1243 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9912, compressed size=101 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9912, compressed size=1111 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9912, compressed size=97 +External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9912, compressed size=246 + +***Container #:7 sequenceId=SINGLE_REFERENCE: 0, start=10065630, span=11707, nRecords=10000, nBlocks=37, nBases=1010000, globalCounter=60000 byteOffset=4516698 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) -DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) +DataSeries (NS/NS_NextFragmentReferenceSequenceID) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) +Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) +Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787459) Content ID/Tag (5788737/XT:A) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5788737) -******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10065630, span=11707 globalRecordCounter=60000, nRecords=10000, sliceHeaderOffset=1312, sizeOfBlocks=792005, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=b38ba42c4cfca7c5d114dea6e11ff820 -Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=135, compressed size=135 +******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10065630, span=11707 globalRecordCounter=60000, nRecords=10000, sliceHeaderOffset=1147, sizeOfBlocks=767687, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=b38ba42c4cfca7c5d114dea6e11ff820 +Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=117, compressed size=117 Core block method=RAW, type=CORE, id=0, raw size=0, compressed size=0 -External Block (BF): method=RANS, type=EXTERNAL, id=0, raw size=15600, compressed size=3589 -External Block (AP): method=RANS, type=EXTERNAL, id=1, raw size=10000, compressed size=2695 -External Block (FP): method=GZIP, type=EXTERNAL, id=2, raw size=6859, compressed size=5117 -External Block (FC): method=GZIP, type=EXTERNAL, id=3, raw size=6859, compressed size=1280 -External Block (QS): method=RANS, type=EXTERNAL, id=4, raw size=1010000, compressed size=358408 -External Block (DL): method=GZIP, type=EXTERNAL, id=5, raw size=133, compressed size=50 -External Block (BA): method=RANS, type=EXTERNAL, id=6, raw size=10002, compressed size=1389 -External Block (7): method=GZIP, type=EXTERNAL, id=7, raw size=0, compressed size=20 -External Block (NF): method=GZIP, type=EXTERNAL, id=8, raw size=98, compressed size=24 -External Block (RL): method=RANS, type=EXTERNAL, id=9, raw size=10000, compressed size=36 -External Block (RG): method=RANS, type=EXTERNAL, id=10, raw size=10000, compressed size=5517 -External Block (MQ): method=GZIP, type=EXTERNAL, id=11, raw size=9902, compressed size=1117 -External Block (RN): method=GZIP, type=EXTERNAL, id=12, raw size=327632, compressed size=64183 -External Block (NP): method=GZIP, type=EXTERNAL, id=13, raw size=39216, compressed size=20041 -External Block (TS): method=RANS, type=EXTERNAL, id=14, raw size=34309, compressed size=14887 -External Block (FN): method=GZIP, type=EXTERNAL, id=15, raw size=9902, compressed size=2532 -External Block (BS): method=GZIP, type=EXTERNAL, id=16, raw size=4165, compressed size=1017 -External Block (IN): method=GZIP, type=EXTERNAL, id=17, raw size=0, compressed size=20 -External Block (18): method=GZIP, type=EXTERNAL, id=18, raw size=0, compressed size=20 -External Block (MF): method=GZIP, type=EXTERNAL, id=19, raw size=9804, compressed size=1686 -External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=9804, compressed size=31 -External Block (CF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=148 -External Block (TL): method=GZIP, type=EXTERNAL, id=24, raw size=10000, compressed size=2719 -External Block (RI): method=RANS, type=EXTERNAL, id=25, raw size=0, compressed size=0 -External Block (RS): method=GZIP, type=EXTERNAL, id=26, raw size=0, compressed size=20 -External Block (SC): method=GZIP, type=EXTERNAL, id=27, raw size=79235, compressed size=21152 -External Block (HC): method=GZIP, type=EXTERNAL, id=28, raw size=0, compressed size=20 -External Block (PD): method=GZIP, type=EXTERNAL, id=29, raw size=0, compressed size=20 -External Block (4279651): method=RANS, type=EXTERNAL, id=4279651, raw size=9902, compressed size=768 -External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=891888, compressed size=46972 -External Block (5063770): method=GZIP, type=EXTERNAL, id=5063770, raw size=56519, compressed size=13522 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9802, compressed size=599 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9902, compressed size=1592 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327632, compressed size=60361 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=358408 +External Block (IN): method=RAW, type=EXTERNAL, id=13, raw size=3, compressed size=3 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=79235, compressed size=20138 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15600, compressed size=3656 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2695 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5054 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9902, compressed size=708 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1383 +External Block (TS): method=RANS, type=EXTERNAL, id=22, raw size=34505, compressed size=14925 +External Block (NP): method=GZIP, type=EXTERNAL, id=23, raw size=40000, compressed size=18524 +External Block (FN): method=RANS, type=EXTERNAL, id=26, raw size=9902, compressed size=2131 +External Block (FC): method=RANS, type=EXTERNAL, id=27, raw size=6858, compressed size=1040 +External Block (FP): method=GZIP, type=EXTERNAL, id=28, raw size=6858, compressed size=5139 +External Block (DL): method=GZIP, type=EXTERNAL, id=29, raw size=133, compressed size=52 +External Block (BA): method=RANS, type=EXTERNAL, id=30, raw size=10000, compressed size=1388 +External Block (BS): method=RANS, type=EXTERNAL, id=31, raw size=4165, compressed size=831 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=2078 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9902, compressed size=768 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=900632, compressed size=46986 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9802, compressed size=599 External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=104, compressed size=55 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=56, compressed size=44 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=215179 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9902, compressed size=623 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9654, compressed size=99 -External Block (5779811): method=RANS, type=EXTERNAL, id=5779811, raw size=9651, compressed size=175 -External Block (5779827): method=GZIP, type=EXTERNAL, id=5779827, raw size=2, compressed size=22 -External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=854, compressed size=346 -External Block (5784419): method=RANS, type=EXTERNAL, id=5784419, raw size=2485, compressed size=1648 -External Block (5785443): method=GZIP, type=EXTERNAL, id=5785443, raw size=9902, compressed size=196 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9902, compressed size=1503 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9902, compressed size=137 -External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9902, compressed size=276 - -***Container #:8 sequenceId=SINGLE_REFERENCE: 0, start=10077236, span=10857, nRecords=10000, nBlocks=52, nBases=1010000, globalCounter=70000 byteOffset=5381898 +External Block (5197897): method=GZIP, type=EXTERNAL, id=5197897, raw size=56, compressed size=47 +External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=215196 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9902, compressed size=623 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9654, compressed size=114 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9651, compressed size=151 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=2, compressed size=2 +External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=854, compressed size=341 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=2485, compressed size=1621 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9902, compressed size=162 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9902, compressed size=1503 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9902, compressed size=145 +External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9902, compressed size=300 + +***Container #:8 sequenceId=SINGLE_REFERENCE: 0, start=10077236, span=10857, nRecords=10000, nBlocks=38, nBases=1010000, globalCounter=70000 byteOffset=5285559 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) -DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) +DataSeries (NS/NS_NextFragmentReferenceSequenceID) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) -Content ID/Tag (5779571/X0:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779571) +Content ID/Tag (5779539/X0:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779539) Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787459) Content ID/Tag (5788737/XT:A) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5788737) -******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10077236, span=10857 globalRecordCounter=70000, nRecords=10000, sliceHeaderOffset=1819, sizeOfBlocks=760215, landmark=0, mapped/unmapped/unplaced: 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size=357563 -External Block (DL): method=GZIP, type=EXTERNAL, id=5, raw size=16, compressed size=27 -External Block (BA): method=RANS, type=EXTERNAL, id=6, raw size=10584, compressed size=1548 -External Block (7): method=GZIP, type=EXTERNAL, id=7, raw size=0, compressed size=20 -External Block (NF): method=GZIP, type=EXTERNAL, id=8, raw size=104, compressed size=24 -External Block (RL): method=RANS, type=EXTERNAL, id=9, raw size=10000, compressed size=36 -External Block (RG): method=RANS, type=EXTERNAL, id=10, raw size=10000, compressed size=5454 -External Block (MQ): method=GZIP, type=EXTERNAL, id=11, raw size=9896, compressed size=1053 -External Block (RN): method=GZIP, type=EXTERNAL, id=12, raw size=328076, compressed size=64263 -External Block (NP): method=GZIP, type=EXTERNAL, id=13, raw size=39168, compressed size=19658 -External Block (TS): method=RANS, type=EXTERNAL, id=14, raw size=34191, compressed size=14869 -External Block (FN): method=GZIP, type=EXTERNAL, id=15, raw size=9896, compressed size=2386 -External Block (BS): method=GZIP, type=EXTERNAL, id=16, raw size=3001, compressed size=813 -External Block (IN): method=GZIP, type=EXTERNAL, id=17, raw size=0, compressed size=20 -External Block (18): method=GZIP, type=EXTERNAL, id=18, raw size=0, compressed size=20 -External Block (MF): method=GZIP, type=EXTERNAL, id=19, raw size=9792, compressed size=1666 -External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=9792, compressed size=31 -External Block (CF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=154 -External Block (TL): method=GZIP, type=EXTERNAL, id=24, raw size=10000, compressed size=2691 -External Block (RI): method=RANS, type=EXTERNAL, id=25, raw size=0, compressed size=0 -External Block (RS): method=GZIP, type=EXTERNAL, id=26, raw size=0, compressed size=20 -External Block (SC): method=GZIP, type=EXTERNAL, id=27, raw size=57860, compressed size=15365 -External Block (HC): method=GZIP, type=EXTERNAL, id=28, raw size=0, compressed size=20 -External Block (PD): method=GZIP, type=EXTERNAL, id=29, raw size=0, compressed size=20 -External Block (4279651): method=RANS, type=EXTERNAL, id=4279651, raw size=9896, compressed size=692 -External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=865674, compressed size=36668 -External Block (5063770): method=GZIP, type=EXTERNAL, id=5063770, raw size=54102, compressed size=10621 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9792, compressed size=524 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9896, compressed size=1267 -External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=123, compressed size=83 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=8, compressed size=28 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=207111 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9896, compressed size=541 -External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=1, compressed size=21 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9709, compressed size=125 -External Block (5779571): method=GZIP, type=EXTERNAL, id=5779571, raw size=2, compressed size=22 -External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=3, compressed size=23 -External Block (5779811): method=RANS, type=EXTERNAL, id=5779811, raw size=9697, compressed size=147 -External Block (5779827): method=GZIP, type=EXTERNAL, id=5779827, raw size=8, compressed size=28 -External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=671, compressed size=277 -External Block (5784419): method=RANS, type=EXTERNAL, id=5784419, raw size=1880, compressed size=1226 -External Block (5785443): method=RANS, type=EXTERNAL, id=5785443, raw size=9896, compressed size=80 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9896, compressed size=1249 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9896, compressed size=77 -External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9896, compressed size=245 - -***Container #:9 sequenceId=SINGLE_REFERENCE: 0, start=10087992, span=12022, nRecords=10000, nBlocks=52, nBases=1010000, globalCounter=80000 byteOffset=6143955 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=328076, compressed size=60371 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=357563 +External Block (IN): method=GZIP, type=EXTERNAL, id=13, raw size=115, compressed size=27 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=57860, compressed size=14551 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15704, compressed size=3755 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2600 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size=3001, compressed size=676 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=1995 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9896, compressed size=692 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=874161, compressed size=36681 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9792, compressed size=524 +External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=123, compressed size=85 +External Block (5197897): method=RAW, type=EXTERNAL, id=5197897, raw size=8, compressed size=8 +External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=207129 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9896, compressed size=541 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9710, compressed size=143 +External Block (5779539): method=RAW, type=EXTERNAL, id=5779539, raw size=2, compressed size=2 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9700, compressed size=148 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=8, compressed size=8 +External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=671, compressed size=269 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=1880, compressed size=1197 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9896, compressed size=96 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9896, compressed size=1355 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9896, compressed size=91 +External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9896, compressed size=267 + +***Container #:9 sequenceId=SINGLE_REFERENCE: 0, start=10087992, span=12022, nRecords=10000, nBlocks=39, nBases=1010000, globalCounter=80000 byteOffset=6026436 Requires reference (true); Preserved read names (true); APDelta (true) Data Series Encodings: -DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 0) -DataSeries (CF/CF_CompressionBitFlags) EXTERNAL (Content ID: 21) -DataSeries (RI/RI_RefId) EXTERNAL (Content ID: 25) -DataSeries (RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) -Content ID/Tag (5779571/X0:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779571) +Content ID/Tag (5779539/X0:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779539) Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787459) Content ID/Tag (5788737/XT:A) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5788737) -******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10087992, span=12022 globalRecordCounter=80000, nRecords=10000, sliceHeaderOffset=2475, sizeOfBlocks=792107, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=49b353dd4bc1814aa3fad94a46a31533 -Header block method=RAW, type=MAPPED_SLICE, id=0, raw size=147, compressed size=147 +******Slice #: 1 slice: sequenceId=SINGLE_REFERENCE: 0, start=10087992, span=12022 globalRecordCounter=80000, nRecords=10000, sliceHeaderOffset=1966, sizeOfBlocks=767804, landmark=0, mapped/unmapped/unplaced: 0/0/0, md5=49b353dd4bc1814aa3fad94a46a31533 +Header block method=RAW, 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compressed size=13439 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9746, compressed size=910 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9875, compressed size=1700 -External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=524, compressed size=210 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=108, compressed size=69 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=212437 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9875, compressed size=818 -External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=5, compressed size=25 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9563, compressed size=192 -External Block (5779571): method=GZIP, type=EXTERNAL, id=5779571, raw size=8, compressed size=28 -External Block (5779779): method=GZIP, type=EXTERNAL, 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globalCounter=90000 byteOffset=6938560 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327744, compressed size=60405 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=358205 +External Block (IN): method=GZIP, type=EXTERNAL, id=13, raw size=614, compressed size=108 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=70636, compressed size=17681 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15642, compressed size=3781 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2722 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5055 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9875, compressed size=1025 +External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=10000, compressed size=34 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1404 +External Block 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(RL/RL_ReadLength) EXTERNAL (Content ID: 9) -DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 1) -DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 10) -DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 12 StopByte: 9) -DataSeries (NF/NF_RecordsToNextFragment) EXTERNAL (Content ID: 8) -DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 19) -DataSeries (NS/NS_NextFragmentReferenceSequenceID) EXTERNAL (Content ID: 20) -DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 13) -DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 14) -DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 24) +DataSeries (BF/BF_BitFlags) EXTERNAL (Content ID: 15) +DataSeries (CF/CF_CompressionBitFlags) HUFFMAN (Symbols: 3 BitLengths 0) +DataSeries (RI/RI_RefId) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (RL/RL_ReadLength) HUFFMAN (Symbols: 101 BitLengths 0) +DataSeries (AP/AP_AlignmentPositionOffset) EXTERNAL (Content ID: 17) +DataSeries (RG/RG_ReadGroup) EXTERNAL (Content ID: 18) +DataSeries (RN/RN_ReadName) BYTE_ARRAY_STOP (Content ID: 11 StopByte: 0) +DataSeries (NF/NF_RecordsToNextFragment) not present +DataSeries (MF/MF_MateBitFlags) EXTERNAL (Content ID: 21) +DataSeries (NS/NS_NextFragmentReferenceSequenceID) HUFFMAN (Symbols: 0 BitLengths 0) +DataSeries (NP/NP_NextFragmentAlignmentStart) EXTERNAL (Content ID: 23) +DataSeries (TS/TS_InsertSize) EXTERNAL (Content ID: 22) +DataSeries (TL/TL_TagIdList) EXTERNAL (Content ID: 32) DataSeries (TC/TC_TagCount) not present DataSeries (TN/TN_TagNameAndType) not present -DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 11) -DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 15) -DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 2) -DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 3) -DataSeries (BB/BB_Bases) not present +DataSeries (MQ/MQ_MappingQualityScore) EXTERNAL (Content ID: 19) +DataSeries (FN/FN_NumberOfReadFeatures) EXTERNAL (Content ID: 26) +DataSeries (FP/FP_FeaturePosition) EXTERNAL (Content ID: 28) +DataSeries (FC/FC_FeatureCode) EXTERNAL (Content ID: 27) +DataSeries (BB/BB_Bases) BYTE_ARRAY_LEN (LenEncoding: Content ID: 42 ByteEncoding: Content ID: 37) DataSeries (QQ/QQ_scores) not present -DataSeries (BA/BA_Base) EXTERNAL (Content ID: 6) -DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 4) -DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 16) -DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 17 StopByte: 9) -DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 5) -DataSeries (RS/RS_RefSkip) EXTERNAL (Content ID: 26) -DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 27 StopByte: 9) -DataSeries (PD/PD_padding) EXTERNAL (Content ID: 29) -DataSeries (HC/HC_HardClip) EXTERNAL (Content ID: 28) +DataSeries (BA/BA_Base) EXTERNAL (Content ID: 30) +DataSeries (QS/QS_QualityScore) EXTERNAL (Content ID: 12) +DataSeries (BS/BS_BaseSubstitutionCode) EXTERNAL (Content ID: 31) +DataSeries (IN/IN_Insertion) BYTE_ARRAY_STOP (Content ID: 13 StopByte: 0) +DataSeries (DL/DL_DeletionLength) EXTERNAL (Content ID: 29) +DataSeries (RS/RS_RefSkip) not present +DataSeries (SC/SC_SoftClip) BYTE_ARRAY_STOP (Content ID: 14 StopByte: 0) +DataSeries (PD/PD_padding) not present +DataSeries (HC/HC_HardClip) not present DataSeries (TM/TM_TestMark) not present DataSeries (TV/TV_TestMark) not present Tag Encodings: -Content ID/Tag (4279651/AM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279651) -Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 4346202) -Content ID/Tag (5063770/MD:Z) BYTE_ARRAY_STOP (Content ID: 5063770 StopByte: 9) -Content ID/Tag (5067107/MQ:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067107) -Content ID/Tag (5131619/NM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5131619) +Content ID/Tag (4279619/AM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 4279619) +Content ID/Tag (4346202/BQ:Z) BYTE_ARRAY_STOP (Content ID: 4346202 StopByte: 9) +Content ID/Tag (5067075/MQ:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5067075) Content ID/Tag (5194586/OC:Z) BYTE_ARRAY_STOP (Content ID: 5194586 StopByte: 9) -Content ID/Tag (5197929/OP:i) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197929) -Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_LEN (LenEncoding: Symbols: 102 BitLengths 0 ByteEncoding: Content ID: 5198170) -Content ID/Tag (5459299/SM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459299) +Content ID/Tag (5197897/OP:I) BYTE_ARRAY_LEN (LenEncoding: Symbols: 4 BitLengths 0 ByteEncoding: Content ID: 5197897) +Content ID/Tag (5198170/OQ:Z) BYTE_ARRAY_STOP (Content ID: 5198170 StopByte: 9) +Content ID/Tag (5459267/SM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5459267) Content ID/Tag (5779523/X0:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779523) -Content ID/Tag (5779555/X0:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779555) -Content ID/Tag (5779571/X0:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779571) +Content ID/Tag (5779539/X0:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779539) Content ID/Tag (5779779/X1:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779779) -Content ID/Tag (5779811/X1:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5779811) -Content ID/Tag (5779827/X1:s) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779827) +Content ID/Tag (5779795/X1:S) BYTE_ARRAY_LEN (LenEncoding: Symbols: 2 BitLengths 0 ByteEncoding: Content ID: 5779795) Content ID/Tag (5783898/XA:Z) BYTE_ARRAY_STOP (Content ID: 5783898 StopByte: 9) -Content ID/Tag (5784419/XC:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784419) -Content ID/Tag (5785443/XG:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785443) -Content ID/Tag (5786979/XM:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786979) -Content ID/Tag (5787491/XO:c) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5787491) +Content ID/Tag (5784387/XC:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5784387) +Content ID/Tag (5785411/XG:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5785411) +Content ID/Tag (5786947/XM:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: Content ID: 5786947) +Content ID/Tag (5787459/XO:C) BYTE_ARRAY_LEN (LenEncoding: Symbols: 1 BitLengths 0 ByteEncoding: 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(AP): method=RANS, type=EXTERNAL, id=1, raw size=10000, compressed size=2672 -External Block (FP): method=GZIP, type=EXTERNAL, id=2, raw size=6499, compressed size=4855 -External Block (FC): method=GZIP, type=EXTERNAL, id=3, raw size=6499, compressed size=1274 -External Block (QS): method=RANS, type=EXTERNAL, id=4, raw size=1010000, compressed size=360145 -External Block (DL): method=GZIP, type=EXTERNAL, id=5, raw size=261, compressed size=45 -External Block (BA): method=RANS, type=EXTERNAL, id=6, raw size=13229, compressed size=1827 -External Block (7): method=GZIP, type=EXTERNAL, id=7, raw size=0, compressed size=20 -External Block (NF): method=GZIP, type=EXTERNAL, id=8, raw size=130, compressed size=24 -External Block (RL): method=RANS, type=EXTERNAL, id=9, raw size=10000, compressed size=36 -External Block (RG): method=RANS, type=EXTERNAL, id=10, raw size=10000, compressed size=5489 -External Block (MQ): method=GZIP, type=EXTERNAL, id=11, raw size=9870, compressed size=1372 -External Block (RN): method=GZIP, type=EXTERNAL, id=12, raw size=327562, compressed size=64000 -External Block (NP): method=GZIP, type=EXTERNAL, id=13, raw size=38960, compressed size=19765 -External Block (TS): method=RANS, type=EXTERNAL, id=14, raw size=34091, compressed size=14812 -External Block (FN): method=GZIP, type=EXTERNAL, id=15, raw size=9870, compressed size=2647 -External Block (BS): method=GZIP, type=EXTERNAL, id=16, raw size=4064, compressed size=1026 -External Block (IN): method=GZIP, type=EXTERNAL, id=17, raw size=0, compressed size=20 -External Block (18): method=GZIP, type=EXTERNAL, id=18, raw size=0, compressed size=20 -External Block (MF): method=GZIP, type=EXTERNAL, id=19, raw size=9740, compressed size=1679 -External Block (NS): method=RANS, type=EXTERNAL, id=20, raw size=9740, compressed size=31 -External Block (CF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=175 -External Block (TL): method=GZIP, type=EXTERNAL, id=24, raw size=10000, compressed size=2840 -External Block (RI): method=RANS, type=EXTERNAL, id=25, raw size=0, compressed size=0 -External Block (RS): method=GZIP, type=EXTERNAL, id=26, raw size=0, compressed size=20 -External Block (SC): method=GZIP, type=EXTERNAL, id=27, raw size=64204, compressed size=17182 -External Block (HC): method=GZIP, type=EXTERNAL, id=28, raw size=0, compressed size=20 -External Block (PD): method=GZIP, type=EXTERNAL, id=29, raw size=0, compressed size=20 -External Block (4279651): method=RANS, type=EXTERNAL, id=4279651, raw size=9870, compressed size=922 -External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=876180, compressed size=43827 -External Block (5063770): method=GZIP, type=EXTERNAL, id=5063770, raw size=57022, compressed size=13398 -External Block (5067107): method=RANS, type=EXTERNAL, id=5067107, raw size=9740, compressed size=787 -External Block (5131619): method=RANS, type=EXTERNAL, id=5131619, raw size=9870, compressed size=1657 -External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=258, compressed size=111 -External Block (5197929): method=GZIP, type=EXTERNAL, id=5197929, raw size=56, compressed size=59 -External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1020000, compressed size=214776 -External Block (5459299): method=RANS, type=EXTERNAL, id=5459299, raw size=9870, compressed size=740 -External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=1, compressed size=21 -External Block (5779555): method=RANS, type=EXTERNAL, id=5779555, raw size=9635, compressed size=208 -External Block (5779571): method=GZIP, type=EXTERNAL, id=5779571, raw size=2, compressed size=22 -External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=10, compressed size=31 -External Block (5779811): method=RANS, type=EXTERNAL, id=5779811, raw size=9605, compressed size=303 -External Block (5779827): method=GZIP, type=EXTERNAL, id=5779827, raw size=22, compressed size=42 -External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=2462, compressed size=912 -External Block (5784419): method=RANS, type=EXTERNAL, id=5784419, raw size=2141, compressed size=1432 -External Block (5785443): method=GZIP, type=EXTERNAL, id=5785443, raw size=9870, compressed size=273 -External Block (5786979): method=RANS, type=EXTERNAL, id=5786979, raw size=9870, compressed size=1536 -External Block (5787491): method=RANS, type=EXTERNAL, id=5787491, raw size=9870, compressed size=218 -External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9870, compressed size=322 +External Block (RN): method=GZIP, type=EXTERNAL, id=11, raw size=327562, compressed size=60227 +External Block (QS): method=RANS, type=EXTERNAL, id=12, raw size=1010000, compressed size=360145 +External Block (IN): method=GZIP, type=EXTERNAL, id=13, raw size=124, compressed size=50 +External Block (SC): method=GZIP, type=EXTERNAL, id=14, raw size=64204, compressed size=16321 +External Block (BF): method=RANS, type=EXTERNAL, id=15, raw size=15640, compressed size=3737 +External Block (AP): method=RANS, type=EXTERNAL, id=17, raw size=10000, compressed size=2672 +External Block (RG): method=RANS, type=EXTERNAL, id=18, raw size=10000, compressed size=5058 +External Block (MQ): method=RANS, type=EXTERNAL, id=19, raw size=9870, compressed size=922 +External Block (MF): method=RANS, type=EXTERNAL, id=21, raw size=10000, compressed size=1409 +External Block (TS): method=RANS, type=EXTERNAL, id=22, raw size=34351, compressed size=14890 +External Block (NP): method=GZIP, type=EXTERNAL, id=23, raw size=40000, compressed size=18373 +External Block (FN): method=RANS, type=EXTERNAL, id=26, raw size=9870, compressed size=2136 +External Block (FC): method=RANS, type=EXTERNAL, id=27, raw size=6447, compressed size=1029 +External Block (FP): method=GZIP, type=EXTERNAL, id=28, raw size=6447, compressed size=4854 +External Block (DL): method=GZIP, type=EXTERNAL, id=29, raw size=261, compressed size=51 +External Block (BA): method=RANS, type=EXTERNAL, id=30, raw size=13141, compressed size=1809 +External Block (BS): method=RANS, type=EXTERNAL, id=31, raw size=4064, compressed size=861 +External Block (TL): method=RANS, type=EXTERNAL, id=32, raw size=10000, compressed size=2181 +External Block (4279619): method=RANS, type=EXTERNAL, id=4279619, raw size=9870, compressed size=922 +External Block (4346202): method=RANS, type=EXTERNAL, id=4346202, raw size=884770, compressed size=43839 +External Block (5067075): method=RANS, type=EXTERNAL, id=5067075, raw size=9740, compressed size=787 +External Block (5194586): method=GZIP, type=EXTERNAL, id=5194586, raw size=258, compressed size=114 +External Block (5197897): method=RAW, type=EXTERNAL, id=5197897, raw size=56, compressed size=56 +External Block (5198170): method=RANS, type=EXTERNAL, id=5198170, raw size=1030000, compressed size=214795 +External Block (5459267): method=RANS, type=EXTERNAL, id=5459267, raw size=9870, compressed size=740 +External Block (5779523): method=GZIP, type=EXTERNAL, id=5779523, raw size=9636, compressed size=243 +External Block (5779539): method=RAW, type=EXTERNAL, id=5779539, raw size=2, compressed size=2 +External Block (5779779): method=GZIP, type=EXTERNAL, id=5779779, raw size=9615, compressed size=341 +External Block (5779795): method=RAW, type=EXTERNAL, id=5779795, raw size=22, compressed size=22 +External Block (5783898): method=GZIP, type=EXTERNAL, id=5783898, raw size=2462, compressed size=879 +External Block (5784387): method=GZIP, type=EXTERNAL, id=5784387, raw size=2141, compressed size=1406 +External Block (5785411): method=GZIP, type=EXTERNAL, id=5785411, raw size=9870, compressed size=239 +External Block (5786947): method=RANS, type=EXTERNAL, id=5786947, raw size=9870, compressed size=1611 +External Block (5787459): method=GZIP, type=EXTERNAL, id=5787459, raw size=9870, compressed size=200 +External Block (5788737): method=RANS, type=EXTERNAL, id=5788737, raw size=9870, compressed size=338 Total Record Count: 100000 @@ -1132,56 +969,43 @@ Core Block(s) Total: 0 External Data Series Totals (external block resolution - all core data encodings accrue to the core block): -BF_BitFlags: 36,752 -AP_AlignmentPositionOffset: 26,437 -FP_FeaturePosition: 43,967 -FC_FeatureCode: 11,303 +RN_ReadName: 601,115 QS_QualityScore: 3,576,041 -DL_DeletionLength: 453 -BA_Base: 17,779 -NF_RecordsToNextFragment: 240 -RL_ReadLength: 360 -RG_ReadGroup: 54,781 -MQ_MappingQualityScore: 12,252 -RN_ReadName: 639,466 -NP_NextFragmentAlignmentStart: 196,860 -TS_InsertSize: 147,976 -FN_NumberOfReadFeatures: 24,189 -BS_BaseSubstitutionCode: 9,120 -IN_Insertion: 200 -MF_MateBitFlags: 16,746 -NS_NextFragmentReferenceSequenceID: 344 -CF_CompressionBitFlags: 1,602 -TL_TagIdList: 27,366 -RI_RefId: 0 -RS_RefSkip: 200 -SC_SoftClip: 163,713 -HC_HardClip: 200 -PD_padding: 200 +IN_Insertion: 456 +SC_SoftClip: 155,197 +BF_BitFlags: 37,403 +AP_AlignmentPositionOffset: 26,437 +RG_ReadGroup: 50,558 +MQ_MappingQualityScore: 8,560 +NS_NextFragmentReferenceSequenceID: 100 +MF_MateBitFlags: 13,940 +TS_InsertSize: 148,578 +NP_NextFragmentAlignmentStart: 183,456 +FN_NumberOfReadFeatures: 19,342 +FC_FeatureCode: 9,100 +FP_FeaturePosition: 43,491 +DL_DeletionLength: 438 +BA_Base: 17,200 +BS_BaseSubstitutionCode: 7,595 +TL_TagIdList: 21,275 Tag Series Distribution: -7 (:): 200 -18 (:): 200 -4279651 (AM:c): 8,804 -4346202 (BQ:Z): 413,436 -5063770 (MD:Z): 118,072 -5067107 (MQ:c): 7,457 -5131619 (NM:c): 14,378 -5194586 (OC:Z): 1,211 -5197929 (OP:i): 551 -5198170 (OQ:Z): 2,074,873 -5459299 (SM:c): 6,909 -5779523 (X0:C): 119 -5779555 (X0:c): 1,384 -5779571 (X0:s): 160 -5779779 (X1:C): 213 -5779811 (X1:c): 1,934 -5779827 (X1:s): 323 -5783898 (XA:Z): 6,511 -5784419 (XC:c): 13,253 -5785443 (XG:c): 2,020 -5786979 (XM:c): 13,370 -5787491 (XO:c): 1,626 -5788737 (XT:A): 2,935 +4279619 (AM:C): 8,804 +4346202 (BQ:Z): 413,575 +5067075 (MQ:C): 7,457 +5194586 (OC:Z): 1,270 +5197897 (OP:I): 500 +5198170 (OQ:Z): 2,135,948 +5459267 (SM:C): 6,909 +5779523 (X0:C): 1,506 +5779539 (X0:S): 40 +5779779 (X1:C): 1,992 +5779795 (X1:S): 122 +5783898 (XA:Z): 6,366 +5784387 (XC:C): 12,962 +5785411 (XG:C): 1,772 +5786947 (XM:C): 14,051 +5787459 (XO:C): 1,555 +5788737 (XT:A): 3,053 diff --git a/src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram b/src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram new file mode 100644 index 00000000000..c9f21fa3e85 --- /dev/null +++ b/src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6b9f5db8be1480671b19a44f563018aff79ef9d213301a8bbc5c8aa5a9a699a8 +size 49110052 diff --git a/src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai b/src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai new file mode 100644 index 00000000000..7d2b0c7dcd8 --- /dev/null +++ b/src/test/resources/large/CEUTrio.HiSeq.WGS.b37.NA12878.20.21.v3.0.samtools.cram.crai @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:3f85846f7d89c42abad7f52c24a3bec2fdf5050c12d1dc34be72c20dcb3b6d4b +size 1149