0.6.26 (2024-06-18)
0.6.25 (2024-06-11)
0.6.24 (2024-06-04)
0.6.23 (2024-05-28)
0.6.22 (2024-05-21)
0.6.21 (2024-05-14)
0.6.20 (2024-05-07)
0.6.19 (2024-04-30)
0.6.18 (2024-04-23)
0.6.17 (2024-04-16)
0.6.16 (2024-04-09)
0.6.15 (2024-04-02)
0.6.14 (2024-03-26)
0.6.13 (2024-03-19)
0.6.12 (2024-03-12)
Merged pull requests:
- chore(deps): bump softprops/action-gh-release from 1 to 2 #185 (dependabot[bot])
- chore(deps): bump mathieudutour/github-tag-action from 6.1 to 6.2 #184 (dependabot[bot])
0.6.11 (2024-03-05)
0.6.10 (2024-02-27)
0.6.9 (2024-02-20)
0.6.8 (2024-02-14)
Merged pull requests:
- Fix
partsgenieid #179 (guillaume-gricourt) - Fix dirname for
retropath2#178 (guillaume-gricourt) - Fix
dnabotversion #177 (guillaume-gricourt) - Updating doe_synbio from version 2.1.2 to 2.2.0 #169 (guillaume-gricourt)
0.6.7 (2024-02-06)
0.6.6 (2024-02-05)
Merged pull requests:
- chore(deps): bump 8BitJonny/gh-get-current-pr from 2.2.0 to 3.0.0 #176 (dependabot[bot])
- chore(deps): bump peter-evans/create-or-update-comment from 3 to 4 #175 (dependabot[bot])
0.6.5 (2024-01-23)
Merged pull requests:
- chore(deps): bump actions/cache from 3 to 4 #174 (dependabot[bot])
- Updating retropath2_wrapper from version 3.1.0 to 3.1.1 #173 (guillaume-gricourt)
0.6.4 (2024-01-16)
0.6.3 (2024-01-09)
0.6.2 (2023-12-26)
0.6.1 (2023-12-19)
0.6.0 (2023-12-18)
Merged pull requests:
- chore(deps): bump actions/download-artifact from 3 to 4 #172 (dependabot[bot])
- chore(deps): bump actions/upload-artifact from 3 to 4 #171 (dependabot[bot])
- Update version 3.1.0
retropath2_wrapper#168 (guillaume-gricourt) - Tool
get_sbml_model#162 (guillaume-gricourt)
0.5.0 (2023-12-11)
Merged pull requests:
- chore(deps): bump actions/setup-python from 4 to 5 #167 (dependabot[bot])
- Updating doe_synbio from version 2.1.1 to 2.1.2 #166 (guillaume-gricourt)
- Update
icfree#161 (guillaume-gricourt)
0.4.7 (2023-12-01)
Fixed bugs:
rpbasicdesigntest failed #121
Closed issues:
- No merged model outputted with
rptools/rpfba#157
Merged pull requests:
- Update
rptools6.5.0 #159 (guillaume-gricourt)
0.4.6 (2023-11-23)
Fixed bugs:
- Update
rptools#158 (guillaume-gricourt)
0.4.5 (2023-11-14)
0.4.4 (2023-11-07)
0.4.3 (2023-11-02)
Merged pull requests:
- Updating rptools from version 6.3.0 to 6.3.2 #152 (guillaume-gricourt)
0.4.2 (2023-10-30)
Merged pull requests:
- chore(deps): bump SimenB/github-actions-cpu-cores from 1 to 2 #156 (dependabot[bot])
- chore(deps): bump peter-evans/create-or-update-comment from 2 to 3 #155 (dependabot[bot])
- chore(deps): bump actions/checkout from 3 to 4 #154 (dependabot[bot])
- Github workflows #153 (guillaume-gricourt)
- Get sbml model #151 (breakthewall)
- Get sbml model #150 (breakthewall)
- Get sbml model #149 (breakthewall)
- Get sbml model #148 (breakthewall)
- Rptools #146 (breakthewall)
0.4.1 (2023-10-10)
0.4.0 (2023-10-09)
Merged pull requests:
- Add tool
neo4jsbml#144 (guillaume-gricourt)
0.3.0 (2023-09-29)
Merged pull requests:
- Get sbml model #143 (breakthewall)
- chore(deps): bump tj-actions/changed-files from 37 to 39 #142 (dependabot[bot])
- Updating dnabot from version 3.1.0 to 4.1.0 #141 (guillaume-gricourt)
- get_sbml_model, load file from history #139 (guillaume-gricourt)
0.2.12 (2023-09-19)
0.2.11 (2023-09-12)
0.2.10 (2023-09-05)
Merged pull requests:
- chore(deps): bump actions/checkout from 3 to 4 #140 (dependabot[bot])
0.2.9 (2023-09-01)
0.2.8 (2023-08-28)
Merged pull requests:
- get_sbml_model, enable to load file from history #137 (guillaume-gricourt)
0.2.7 (2023-08-15)
0.2.6 (2023-08-08)
0.2.5 (2023-08-01)
0.2.4 (2023-07-25)
0.2.3 (2023-07-18)
0.2.2 (2023-07-11)
0.2.1 (2023-07-04)
0.2.0 (2023-07-03)
Implemented enhancements:
- Add workflow
strain design#127 - Add workflow
genetic design#125 - Add workflow
biosensor#124 - Add workflow
retrosynthesis#123
Fixed bugs:
- workflow
pathway analysis#126 - rp2biosensor: syntax #130 (guillaume-gricourt)
Merged pull requests:
- Tools sample, table syntax #136 (guillaume-gricourt)
- chore(deps): bump tj-actions/changed-files from 36 to 37 #135 (dependabot[bot])
- Tools:
selenzy_wrapper#134 (guillaume-gricourt) - Workflows: add
genetic assembly#133 (guillaume-gricourt) - Workflows:
straindesign#132 (guillaume-gricourt) - Workflows: add
biosensor#131 (guillaume-gricourt) - workflows
retrosynthesis#129 (guillaume-gricourt) - Add
pathway_analysisworkflow #128 (guillaume-gricourt) - fix
sbol_converter#122 (guillaume-gricourt) - chore(deps): bump tj-actions/changed-files from 35 to 36 #120 (dependabot[bot])
- Workflows
basic_assembly_workflow#119 (guillaume-gricourt) - chore: rm config folders #118 (breakthewall)
- Taxonid #117 (breakthewall)
- Taxonid #116 (breakthewall)
- chore(selenzy_wrapper): rm comment #115 (breakthewall)
- taxonid #114 (breakthewall)
0.1.0 (2023-05-17)
Merged pull requests:
- fix: XDG_CACHE_HOME #113 (breakthewall)
- Fix rptools - rpthermo: locate cache dir #112 (guillaume-gricourt)
- Fix straindesign: testtoolshed #111 (guillaume-gricourt)
- Updating sbol3_diff from version 1.0a16 to 1.0a17 #110 (guillaume-gricourt)
- Updating sbol_converter from version 1.0a16 to 1.0a17 #109 (guillaume-gricourt)
- sbol_converter: add citation tag #108 (guillaume-gricourt)
- Feat(get sbml model) #107 (breakthewall)
- chore(deps): bump github/super-linter from 4 to 5 #106 (dependabot[bot])
- feat(get_sbml_model) #105 (breakthewall)
- Shed lint #104 (guillaume-gricourt)
- Updating rpbasicdesign from version 1.1.0 to 1.2.2 #103 (guillaume-gricourt)
- retropath2_wrapper - Id retropath2 ambiguous #102 (guillaume-gricourt)
- Updating retropath2_wrapper from version 3.0.0 to 3.0.1 #101 (guillaume-gricourt)
- fix(github): workflow syntax #97 (guillaume-gricourt)
- chore(github): enable autoupdate #96 (guillaume-gricourt)
- Refactor repository #95 (guillaume-gricourt)
- feat(retropath2_wrapper): update to 3.0.0 #94 (guillaume-gricourt)
- feat(rrpser): update #93 (guillaume-gricourt)
- fix(get_sbml_model): output fmt #92 (guillaume-gricourt)
- feat(rp2paths): output format #91 (guillaume-gricourt)
- Doe synbio #90 (guillaume-gricourt)
- rptools #89 (guillaume-gricourt)
- Icfree #88 (guillaume-gricourt)
- Sbol3 diff #87 (kenza12)
- style(rpranker): add single quotes and element_identifier #86 (kenza12)
- feat(rptools): add one common macro file and test only content in rpt… #85 (kenza12)
- Iuc rptools #84 (kenza12)
- Iuc rp2biosensor #83 (kenza12)
- Iuc lcrgenie #82 (kenza12)
- Iuc dnaweaver #81 (kenza12)
- Update rptools suite to 6.0.1 #80 (kenza12)
- doc(rpExtractSink): add creator names and update rptools #79 (kenza12)
- Iuc rpfba #78 (kenza12)
- Iuc rpreport #77 (kenza12)
- Iuc rpviz #76 (kenza12)
- doc(optdoe): optimize name and def tool #75 (kenza12)
- fix(OptDoE): remove duplicates from codon tables #74 (kenza12)
- Iuc rpranker #73 (kenza12)
- Iuc optdoe #72 (kenza12)
- Iuc rpranker #71 (kenza12)
- Test sbml2sbol (IUC requests) #70 (kenza12)
- Add straindesign wrapper #69 (guillaume-gricourt)
- Iuc sbml2sbol #68 (kenza12)
- Iuc rp2paths #67 (kenza12)
- fix(Retropath2_wrapper): fix writing in tool dir with kinstall option #66 (kenza12)
- IUC rp2paths #65 (kenza12)
- Iuc rpcompletion #64 (kenza12)
- test(sbol-converter): add few tests and README #63 (kenza12)
- feat(sbol_converter): add sbol converter (splitted wrappers) #62 (kenza12)
- feat(sbol-converter): add first release of sbol-converter wrapper #61 (kenza12)
- Iuc retropath2 #60 (kenza12)
- Iuc retropath2 #59 (kenza12)
- feat(rrparser): update rrparser and add rules-dir option #58 (kenza12)
- Iuc selenzy #57 (kenza12)
- Iuc rpextractsink #56 (kenza12)
- Iuc rrparser #55 (kenza12)
- feat(rpbasicdesign): add missing max_gene_per_construct parameter and… #54 (kenza12)
- Update rpfba #53 (kenza12)
- Iuc rp2paths #52 (kenza12)
- Iuc dnabot #51 (kenza12)
- Test dnabot #49 (kenza12)
- Iuc rpbasicdesign #48 (kenza12)
- Test rpbasicdesign #47 (kenza12)
- test(rp2biosensor): add sink test file and update to 3.1.0 #46 (kenza12)
- Test rpbasicdesign #45 (kenza12)
- feat(rp2biosensor): add input sink file and upgrade to 3.0.0 #44 (kenza12)
- Test rp2biosensor #43 (kenza12)
- Test dnabot #42 (kenza12)
- feat: add rp_fba_analysis #41 (guillaume-gricourt)
- Test rpreport #40 (kenza12)
- Test rpranker #39 (kenza12)
- Test rpscore #38 (kenza12)
- Test rpcompletion #37 (kenza12)
- Test sbml2sbol #36 (kenza12)
- Test rpextractsink #35 (kenza12)
- Test rpthermo #34 (kenza12)
- Test selenzy #33 (kenza12)
- test(retropath2): update test section with small inputs #32 (kenza12)
- Test retropath2 #31 (kenza12)
- Test dnaweaver #30 (kenza12)
- Feat inchi to sink #29 (kenza12)
- test(LCRGenie): update test section #28 (kenza12)
- Test optdoe #27 (kenza12)
- Test rrparser #26 (kenza12)
- fix(rpFBA): fix objective_rxn_id parameter name #25 (kenza12)
- Feat inchi to sink #24 (kenza12)
- Test rpfba #23 (kenza12)
- Feat rpfba #22 (kenza12)
- Test rpfba #21 (kenza12)
- Test get sbml model #20 (kenza12)
- Test rpextractsink #19 (kenza12)
- Feat rp2biosensor #18 (kenza12)
- Test rpextractsink #17 (kenza12)
- Test rpextractsink #16 (kenza12)
- Test partsgenie #15 (kenza12)
- Test lcr genie #14 (kenza12)
- Test dnaweaver #13 (kenza12)
- Test optdoe #12 (kenza12)
- Test selenzy wrapper #11 (kenza12)
- Test rprank #10 (kenza12)
- Feat rpviz #9 (kenza12)
- feat(dnabot): output a tar file and update data tests #8 (kenza12)
- Test sbml2sbol #7 (kenza12)
- test(rpscore): add test section and data tests #6 (kenza12)
- Feat dnabot #5 (kenza12)
- test(rp2paths): update data tests and test section #4 (kenza12)
- Test rpthermo #3 (kenza12)
- Test rpfba #2 (kenza12)
- Test rpcompletion #1 (kenza12)
* This Changelog was automatically generated by github_changelog_generator