DESCRIPTION

Package: somenone
Type: Package
Title: R functions required by the somenone NextFlow nf-core pipeline
Version: 0.0.6
Author: Bruce Moran
Maintainer: Bruce Moran <bruce01campus@gmail.com>
Description: somenone, acronymised from SOM(atic) (E)N(-of-)ONE (deep apologies). Facets, GRIDSS and our own somatic variant consensus calling method are bundled to allow easier and cleaner use in the pipeline.
License: AGPL-3
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.0
Depends:
    R (>= 3.5.0),
    BSgenome.Hsapiens.UCSC.hg19,
    BSgenome.Hsapiens.UCSC.hg38,
    BiocGenerics,
    ComplexHeatmap,
    EnsDb.Hsapiens.v75,
    EnsDb.Hsapiens.v86,
    GenomeInfoDb,
    GenomicFeatures,
    GenomicRanges,
    IRanges,
    S4Vectors,
    StructuralVariantAnnotation,
    TxDb.Hsapiens.UCSC.hg19.knownGene,
    TxDb.Hsapiens.UCSC.hg38.knownGene,
    VariantAnnotation,
    bedr,
    biomaRt,
    circlize,
    customProDB,
    dplyr,
    ensembldb,
    facets,
    ggplot2,
    grDevices,
    grid,
    openxlsx,
    org.Hs.eg.db,
    pheatmap,
    plyr,
    readr,
    readxl,
    rjson,
    stringi,
    stringr,
    tibble,
    tidyr,
    tidyselect,
    utils
Suggests:
    testthat (>= 3.0.0)
Config/testthat/edition: 3