Reproducibility repo for Shashikadze et al. "Multi-omics profiling of lungs from genetically diabetic pigs reveals reduced ALOX15 levels and impaired eicosanoid switching as mechanisms contributing to a proinflammatory milieu".
Proteomics dataset can be downloaded from ProteomeExchange repository (dataset identifier - PXD038014)
Lipidomics dataset can be found in supplementary materials of the paper
R codes to reproduce the statistical analysis and visualization present in the manuscript
- code to reproduce figure 1 (and supplementary figure 2)
- code to reproduce figure 2 (and supplementary figure 3)
- code to reproduce figure 3
- code to reproduce figure 4
- code to reproduce figure 5
- code to reproduce supplementary figure 1
- code to reproduce supplementary tables
Differential abundance analysis of proteomics data was performed with this code