-
Notifications
You must be signed in to change notification settings - Fork 2
/
example_input.nex
167 lines (164 loc) · 7.38 KB
/
example_input.nex
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
#NEXUS
BEGIN DATA;
DIMENSIONS NTAX=157 NCHAR=35;
FORMAT DATATYPE=DNA MISSING=? GAP=- ;
MATRIX
CHCH_BX1191 NASANCCNCAAAGNGACAGGNGTCCCGNGNATCGA
CHCH_BX1193 NNCACCCNCAAAGNGACAGGNGTNCNGNGNATCGA
DSAZ_BX1216 NNNNNCNNNANNNNGNNAGNNNNNNNGNNNNNNNN
DSNM_BX88 CRGANCCNNNAAGNNNNAGNCNTNNCGGGNATCGA
DSNM_BX94 CRGANCCNNNANGNGNNAGNNNTNNNGGNGNTCGN
DSNM_BXDS02 CRGANCCNNAAAGNGANAGNCNTCNCGGGGNTCGA
EAAL_BX1380 NNNNCCCNNNANGNNNCANGNGNNNCGNNNNNNNN
EAAL_BX1387 NNNNNNNNNNNNNNNNCNNGNGNNNNNNNNNNNNN
EAAL_BX211 NNNNCCNNNNNNNGGNCANGNNTNCNNGNGANNGA
EAAL_BXEA27 CANACCCCNNNANGNNCAGGYGTCCCGNGGATCGA
EAGA_BX217 CNGANCNNNANANGGACAGGCGTNCCGGNGATNGA
EAGA_BX219 CAGACCCCCAAANGGNCAGGCGTCCCGGGGATCGA
EAGA_BX220 CAGACCCCCAAAGGGAMAGGNGTCCCGGGGANCNA
EAGA_BX473 CNNANCNNNNANGGGNCAGGNGTCCCGGNGATNGA
EAGA_BXEA14 NNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNTNNN
EAGA_BXEA19 NAGANCCCCAAAGNGACAGGNGTCCCGGGNATCGA
EAGA_BXEA21 CAGACCCNCANAGGRACAGGCNTCCCGGGGAKCGA
EAGA_BXEA25 NAGANCCCCNNAGNNNCAGGNGTNCCGRGNATCGG
EAGA_BXEA26 CAGASCCCYANAGGGACAGGCGTCCCGGGGATCGA
EAIL_BX33 CAGANCCCNAAAGGGACAGGNATCCCGGGGATCGA
EAIL_BXIL12 NAGACCCCCAAAGGGACAGGCRTCCCGGGGATTGA
EAIL_BXIL15 CAGACCCCCANAGGGACAGGCRTCCCGGGNATCGA
EAIL_BXIL16 NAGACCCCCAAAGNGACAGGNGTCCCGAGGATCGA
EAIL_BXIL18 CAGANCCCCAAAGNGACAGGCGTCCCGGGNATCGA
EAIL_BXIL19 NAGACCCCCANAGNGACAGGCGTCCCGGNGATCGA
EAIL_BXIL21 CAGACCCCNRNAGNGACAGGCNTCCCGGNGATCGA
EAIL_BXIL46 CAGANCCCNAAANNGACAGGCGTCCCGNGGATCGA
EAIL_BXIL51 CAGANCCCCAAAGGGACAGGCNTCCCGRGGATCGA
EAIL_BXIL53 NAGANCCCCANAGGGACAGGNGTCCCGNGNNTCGA
EAIL_BXIL56 CAGACCCCCAAAGGGACAGGCGTCCCGGGGATCGA
EAIL_BXIL62 CAGANCCCCANAGNGACAGGCGTCCCGGGGATCGA
EAIL_BXIL70 CAGACCCCCAAAGGGACAGGCGTCCCGGGGATCGA
EAKY_BX1027 CANACCNCCAAANGGACAGGCNNNNCGNNGATNNA
EAKY_BX26 NNNACNNNCNNANGGNCNGNNNNNNNGNNGNNNNN
EAKY_BX27 CNNNCCNCCNAANGGACAGGCNNNNCGGNGATNNA
EAMS_BXEA28 CAGANCCCCAAANGGACAGGCGTCCCGGSGAGCGA
EANC_BX316 CANACNCNCANAGGGACAGGCGTCCCGGNGATNGA
EANC_BX318 CNNNCNCNNNAANNGACAGGCGNCNCRGGGATCGA
EANY_BXEA11 NNNNCNNNNNNNNGNNNANNNNNNNNRNNGNNNNN
EAPA_BXEA13 NNNACCNCYAANNGNACRGGCNNNNNGNGNNNCGA
EARI_BX1608 CNNANNNCNANNNGNNCAGNCNNNNNNNNNNNNNN
EASC_BX232 NAGACCCNNAAAGGGNCAGGCGTCCCGGGGATCGA
EASC_BX235 CAGACCCCCAAAGGGNCAGGCGTCCCGGSGATCGA
EATN_BX35 NNNNCNNNNNNNNNNNNANNNGNNNNNNNGANNNN
EAVA_BX103 CNNACNNNCNNANNNNCANNCNNNNNNNNGNTNNA
EAVA_BX104 NNNANCNNNANNGNNACAGGCGTCNCGNNNANNNA
EAWV_BX449 NNNACCNNCAAAGGGNCAGGCGTNNCNGNNNTNGA
FLFL_BX937 CAGACNNCNAAAGGGACAGGCGNNCCGRGGATCGA
FLFL_BXFL01 NAGMCCCCNAAAGNGACAGGCGNNCCGGNGATCGA
FLFL_BXFL04 CNNACCNCNNNANGGACAGGCGNNCCGNNGATCNN
GUFL_BX503 NAGACCCCCAAAGNNACAGGNGTCCCGGNNATCGA
GUFL_BX509 NNNNCCNNNNNNGNNNCANNNGTNCNNNNNNNNNN
GUFL_BX628 NNNACNNNCNAAGNNNCANGNGNNNCGNNNNNNNN
GUFL_BX684 NAGANCCCCAAAGNNACAGGNGTCCCGGGNNTCGA
GUFL_BX685 CAGACCCCCAAAGGGNCAGGNGTCCCGGGGANNGA
GUFL_BX933 NNGNCNCCCAAAGGGACANGNGTCCCGGGGATNGA
GUFL_BXGU07 CNNANCNCCAAAGGGACAGGCGNCCCGGGGATCNA
GUFL_BXGU08 CNNNNNNNCANANGGNCANNNGNNNCGNNGNNNNN
GUFL_BXGU10 CNNACCNCCANANGGACANNCNNNCCGGNGANNNA
GUFL_BXGU11 CNNACNNCCAAANGGACANGNGNCNCGRNGNTNNN
GUFL_BXGU13 CNNACCNCCAAANGGACAGGCGNCNCGNNGATNNN
GUFL_BXGU25 CAGACCNCCAAAGGGACAGGNNTCCYGGGGATNGA
GUFL_BXGU26 NANNNCNCNANNNGNACANNNGNNNCGGNGNNNNN
GUFL_BXGU27 CNNACCNCCANAGGGACAGGCGNCCCGGNGATCNA
GUFL_BXGU28 CNNACCNCNNNANGGACAGGNGNCNCGNNGANNNA
GUFL_BXGU29 CNNANCNNCNAANGGNCANNCGNNNCGNNGANNNN
GUFL_BXGU32 NAGANCCCCNAAGNGACAGGNGTCCCGGGNATCGA
GUFL_BXGU33 NAGANYCNCNNAGNGNCAGGNGTCCCGGGGATNGA
GULA_BX762 CAGACCCCCAAANGGACAGGCGTCCCGGGGATCGA
MXMX_BX1194 CAGACCCCNAAAGGGACAGGCGTCCNGGGGATCGA
MXMX_BX1195 NNGACCCCNAAAGNGACAGGNGTCCCGGGNATCGA
MXMX_BX1196 CAGACCCCNAAAGRNNCAGGCGTCCCGGGGNTCGA
OGCLGU01 CAGACNCCNAAAGGGANAGNCGTTCCGGGGANCGN
OGCLGU02 CAGANNCNNAAAGGGNNAGNCGTTCCGNGGANCGN
OGKPFP2120 CNNNCNNNNNNNNNNNNANNNNNNNNNNNNNNNNN
OGKPFP2994 CNNACNNNNANANGNNNANNNNNNYNGNNGNNNNN
ONIA_BX1435 CAGACCCCNANNGNGANNGNCNTCCNGGGGNTCGA
ONIL_BX32 CAGANCCCNAAAGNGANAGGNNTCCCGGGNNNCGA
ONIL_BXON01 CANACCCCCAAAGNGACAGGCGTCCCNGGGATNGA
ONIL_BXON02 NAGANCCCNANNGGNACAGGCGTCCCGNGGATCGA
ONIL_BXON04 CAGACCCCNAAAGNGANAGNCNTCCCGGGGATCGA
ONIL_BXON11 CAGACCCCNAAAGNGANAGNCGTCCCGGGGNTCGA
ONIL_BXON20 CAGACCCCNAAAGNGANAGNCNTCCNGGGGNTCGA
ONIL_BXON25 CAGACCCCNANAGNGACAGGCNTCCCGGGGATCGA
ONIL_BXON29 CAGACCCYNAAAGNGACAGGNGTCCCGGGNNTNGN
ONIL_BXON32 CAGANCCNNANAGNGANNGNCGTCCNGGGNNTCGA
ONIL_BXON33 CAGANCCNNAAAGNGANAGNCNTCCNGAGGNTCGA
ONIL_BXON41 CAGANCCCCAAAGNGACAGGCNTCCCGGGNNTCGA
ONIL_BXON43 CAGACCCCNAAAGNGANAGNCNTNCCGGGGNTCGA
ONWI_BX492 NNGANCCNNNAAGNNANNGNNNTNNCGRGNNTCGA
TCAL_BX1614 CAGANCCNNAAANNGACAGGNGTCCCGRGGATCGA
TCAL_BX1616 CNNACNNCCNAANGGNCAGGCGNCNCGGNGATNNN
TCAL_BX1618 NNNNNCCNNNNNGNNNCAGGNNNNCCGNGNNNNNA
TCAL_BX271 CAGANCCNCANAGGGNCAGGCGTCCCGGGGATCGA
TCAL_BX272 NAGACCCCCNAANNNACANGNGNCCCGNNNATCGA
TCAL_BX273 CAGANCCCNNAAGNNNCAGGNNWCCCNNSNATCGA
TCAL_BX279 CAGACCCNCANAGGGNCAGGNGTCCCGGGGATCGA
TCAL_BX280 CAGACCSCCANAGGGACRGGCATCCCGRSGATNGA
TCAL_BX281 NAGANCCNNNAARNNNCAGGNGNCCCGGGNANNGA
TCAL_BX282 NANANCCNCNNAGNNNCAGGNNTNCCGGNGNNNNA
TCAL_BX283 CNGACCCNNNANGGNACAGGCGTCCCGGGNATCGA
TCAL_BX289 NAGACCCCNANAGGGNCAGGCGTNCCGGNNTTCGA
TCAL_BX302 CAGACCCCCAAAGGGACAGGCGTCCCGGGGATCGA
TCAL_BX304 CAGACCCCCAAAGGGACAGGCNTCCCGGGGATCGA
TCAL_BX305 NNNACCCCCAAAGNGNCAGGNGTCCCRRGNATCGA
TCAL_BX310 NNNNNCCNNNAAGNNACAGGCNNNNCGGNNNNNKA
TCAL_BX326 NNNANNCNNNANNNGNCNNNNNNCCNRGNNANNNN
TCAL_BX327 CAGMNCCNCAAANGNACRGGNRTCCCGGGNANCGA
TCAL_BX592 NAGNCCCNCNAAGNNNCRGGNNNNNCGNGNANNNA
TCAL_BX612 NANACCCNCNAAGNNNCAGGNGTCCCGGGNATNGA
TCAL_BXTC01 NNNACCNCCANANGGACAGGCGNCNCGGNGATCNN
TCAL_BXTC09 CNNACCCCCANAGGGACAGRCGNCCCRGGGATCGA
TCAL_BXTC103 NAGACCCCCAAAGNGACAGGCGTCCCGNGGATCGA
TCAL_BXTC104 CAGACCCCCAAAGGGACAGGCGTCCCGGGGANCGR
TCAL_BXTC11 NNNNNNNCNNNNNGNNCAGNNNNNNCGGNGNNNNN
TCAL_BXTC12 CNNNCNNCCNRANGGACAGGCNNNNCGNNGNTNNN
TCAL_BXTC21 CNNNCCNCCNANNGNNCAGNCGNNNNRGNGATNNN
TCAL_BXTC24 CNNACNNNCNNANGGNCAGGCNNNCCGGNGANNNN
TCAL_BXTC29 NNNNCCNNCAAANGGACAGGCNNCNCGGNGNNNNN
TCAL_BXTC33 NNNACCNNNANNGNGACAGGCGNNCCNGNNANNGA
TCAL_BXTC39 CNNACCNCCANANGGACANGCGNCCCGNNGNTNNN
TCAL_BXTC63 NAGACCCCCAAAGNGACAGGCGTCCCGGGNATCGA
TCAL_BXTC65 NNNANNNNCNANNNNANANNNGNNNNNNNNNTNNN
TCAL_BXTC86 NNNACNNNNNNNGNNNCANGNNNNNCNNGNANNGN
TCAL_BXTC90 NANANCCCCAAANNNACAGGNGTCCCGGGNATCGA
TCAL_BXTC91 CANACCCCCANAGNGACRGGCGTCCCGGGGTTCGA
TCAL_BXTC92 NAGACCCCNAAAGNGACAGGNRTCCCGGGNATNGA
TCAL_BXTC93 NNNACCCCCANAGNNACAGGCGNCCCGGCNANCGA
TCAL_BXTC94 CAGANCCCYAAAGGGACAGGCGTCCCGGGGATCGA
TCAL_BXTC97 NAGACCCCCANAGNGACAGGCNTCCCGGGNANCGA
TCAL_BXTC98 CAGACCCCCAAAGGGACAGGCRTCCCGGGGATCGA
TCAL_BXTC99 CAGANCCCCAAAGGGACAGGCGTCCCRGGNATCGA
TCGA_BX300 NNNACNCNNNNANGGNCAGGCNNNCCGGNGNNNGA
TCGA_BX343 NNNNNCNNNNANGNNNNNNGNGNNNNNNNNNNNNR
TCGA_BX344 CAGACCCCCANAGNGNCAGGNGTCCCGGGGATNGA
TCGA_BX589 CNNANNNCNAAAGGGNCAGGCNNNCNGGGGNTNGN
TCGA_BXTC34 CAGACCCCCAAAGGGACAGGNGTCCNGGGGATCGA
TCGA_BXTC35 NNGACCCCCARAGGNACAGGCGTCCCGGGNATCGA
TCGA_BXTC36 CNGANCCNCNAAGNNNCANGCRTCCNGGGNATCGA
TCGA_BXTC46 NNNACCNNTNANGGGMCNNGCNNCCCGNGGNNCNA
TTAR_BX507 CAGACCCNCAAANNNACAGGCGTCCCGAGGTTCGA
TTAR_BX984 CAGACCCCNAANGNGACAGGCGTCCCGGGNTNCGA
TTAR_BX987 CAGANCCCCAAAGGGACAGGCGTCCCGNGGATCGA
TTLA_BX421 NANACCCCCAAAGNGACARGNGTNCCGAGNWTCGA
TTLA_BX422 NNNACCCCCAAAGNGACAGGNGTCCCGRCNNNCGA
TTLA_BX775 NNNACNNNNAANNGNACANGCNNNNCGASNATCNA
TTLA_BXTT13 CAGACCCCCAAAGNGACAGGNGTCCCGNSNATCGA
TTMO_BX109 CNNANCNNCNAANGGNCAGGNNNNNCGANGATNNA
TTMS_BX240 NAGACCCCCRNAGNGACAGGCGTYCCGNGNANCGA
TTMS_BX241 NNNACNNNNAAAGNGNCAGGCGTNNCGNNNANCNA
TTTX_BX11 CNNACCNNNAAANGGNCAGGNGNYCCGNNGANNNA
TTTX_BX15 CANACCNNCAAANGGACAGGCGNCNCGRNGANCNA
TTTX_BX16 CNNANCNCCAARNGGACAGGCGNNCCGNNRNNCNA
TTTX_BX19 CANANCCNNANAGGGACAGGCGTNNCGAGRNTCGA
TTTX_BX22 TANANCNNCAANGGGACAGGCGTNCCGGNGNNCGA
TTTX_BX224 CNNACCNCCAAAGGGNCAGGCGNCNCGAGGATCNA
TTTX_BX23 CNGACCCNCAAAGGGNCAGGNGTNCCGNGGNNNNA
;
END;