Written by B.T. Martin and T.K. Chafin
Runs MrBayes on multiple loci in parallel. Also automatically writes a MrBayes block into each nexus file
Usage:
./parallelMB.pl -i /path/to/dir/*.nex -p <#processors> [options]...
Each locus must be a separate nexus file
MrBayes (mb) and mbsum (BUCKy - Bayesian Concordance Analysis) must be in your path
The script takes nexus files as input, but can also convert .fasta to .nex format
If you want the script to convert .fasta files to .nex, use the [-e, --nex] option
Here's a conversion script to go from .loci (outfile from pyRAD) to .fasta: file_converters repository