From 1cf6362408cfa8bd3fad741b8c71e62fdbae5c6e Mon Sep 17 00:00:00 2001
From: boehmdo <dominik.t.boehm@googlemail.com>
Date: Fri, 23 Feb 2024 11:03:22 +0100
Subject: [PATCH 1/2] fix missing variantannotation error

---
 .../form/TherapyRecommendationFormAlterationInput.tsx  | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/src/pages/patientView/therapyRecommendation/form/TherapyRecommendationFormAlterationInput.tsx b/src/pages/patientView/therapyRecommendation/form/TherapyRecommendationFormAlterationInput.tsx
index a22faeed148..d49014d5fec 100644
--- a/src/pages/patientView/therapyRecommendation/form/TherapyRecommendationFormAlterationInput.tsx
+++ b/src/pages/patientView/therapyRecommendation/form/TherapyRecommendationFormAlterationInput.tsx
@@ -79,10 +79,12 @@ export class TherapyRecommendationFormAlterationInput extends React.Component<
                 mutation.referenceAllele +
                 ',' +
                 mutation.variantAllele;
-            const annotation = this.props.indexedVariantAnnotations![index];
-            const myVariantInfo = this.props.indexedMyVariantInfoAnnotations![
-                index
-            ];
+            const annotation = this.props.indexedVariantAnnotations
+                ? this.props.indexedVariantAnnotations[index]
+                : undefined;
+            const myVariantInfo = this.props.indexedMyVariantInfoAnnotations
+                ? this.props.indexedMyVariantInfoAnnotations[index]
+                : undefined;
             let dbsnp;
             let clinvar;
             let cosmic;

From f424de599cacaf4d1a2d00a309da251b37eae117 Mon Sep 17 00:00:00 2001
From: boehmdo <dominik.t.boehm@googlemail.com>
Date: Fri, 23 Feb 2024 12:45:41 +0100
Subject: [PATCH 2/2] fix mtbModel

---
 packages/cbioportal-utils/src/model/TherapyRecommendation.ts | 1 -
 src/pages/patientView/therapyRecommendation/MtbTable.tsx     | 1 -
 2 files changed, 2 deletions(-)

diff --git a/packages/cbioportal-utils/src/model/TherapyRecommendation.ts b/packages/cbioportal-utils/src/model/TherapyRecommendation.ts
index cf7c3ded1d1..9a153feb006 100644
--- a/packages/cbioportal-utils/src/model/TherapyRecommendation.ts
+++ b/packages/cbioportal-utils/src/model/TherapyRecommendation.ts
@@ -38,7 +38,6 @@ export interface IMtb {
     geneticCounselingRecommendation: boolean;
     rebiopsyRecommendation: boolean;
     generalRecommendation: string;
-    diagnosis: string;
     date: string;
     mtbState: MtbState;
     samples: string[];
diff --git a/src/pages/patientView/therapyRecommendation/MtbTable.tsx b/src/pages/patientView/therapyRecommendation/MtbTable.tsx
index 79a51fb1c07..2a9de25d43f 100644
--- a/src/pages/patientView/therapyRecommendation/MtbTable.tsx
+++ b/src/pages/patientView/therapyRecommendation/MtbTable.tsx
@@ -484,7 +484,6 @@ export default class MtbTable extends React.Component<IMtbProps, IMtbState> {
             geneticCounselingRecommendation: false,
             rebiopsyRecommendation: false,
             therapyRecommendations: [],
-            diagnosis: '',
             date: now.toISOString().split('T')[0],
             mtbState: Object.keys(MtbState).find(
                 key =>