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60b9b3990ed91c0ce59226344dca5979 *DESCRIPTION
837dc998a0bfc9cb81b08d5583f4d980 *NAMESPACE
dc74f3941cd7eb5d5d2820a78e855291 *NEWS
0090c3e305006e38f8ec8cef5616a3e2 *R/bayes.R
1c95cfc1a6597466e42c386b0c6a6196 *R/extract.R
c37085ee8b851dfd42eea66341904e82 *R/fit.R
06b55a573555d6e0315478fb47fd48c0 *R/gcstats.R
3ad97d0891d98e23cd5be6b4417067c5 *R/graphics.R
79624c9cf668bfb2b05e8a339e98f393 *R/misc.R
4b7f3320bad5b252cc0727ba9e019ab8 *R/model.R
8ab48098af7628c6d2f155b8f9f24b74 *R/mutations.R
1415cb2b3e892624fb7ea4ff76a2c46f *R/read.R
bfe91a98d0c94dab8ae8bcb554eb5acd *R/results.R
f763a946f45e700642201c486263b969 *R/segments.R
0359f75dbcc67975a0a8654cc04e32a3 *R/solutions.R
379d0ddc4bffc4fcd9449f18c0a2654a *R/windows.R
60d166bb186a38ec469d4e76452c2052 *build/vignette.rds
33cb86ef72ebdd33f91839241f0bd890 *data/CP.example.RData
47e0915035bb00de6af2b672114b34e0 *data/example.seqz.rda
49a67dbefc97a501bc47492ca1108e0a *inst/CITATION
a93878af46779d2634e55b13814cb9e2 *inst/doc/sequenza.R
25228690501dd6c00834e253f2002e07 *inst/doc/sequenza.Rmd
fd4b930147525ec496116c2c84ca6b31 *inst/doc/sequenza.html
6cecdcda8da1c0a1c7971d6f3923bb20 *inst/extdata/example.seqz.txt.gz
70764a3c09eea6ae46eaa489498da14f *inst/extdata/example.seqz.txt.gz.tbi
5fcc49fe68e8207193911291677fdeb5 *man/CP.data.Rd
6fdf4884a01b8a3586464842f004c469 *man/baf.model.fit.Rd
e503cc7708c4f3a8327a55827398b240 *man/bayes.Rd
10f9ad6809df484eb98f4de2bde191ec *man/breaks.Rd
31fc1f8ee27e8a7ca30dbdee27bddbae *man/chromosome.view.Rd
9c03a6ae6635e05ab4b74eafc17f1eb1 *man/cp.plot.Rd
d436a0c2af880fa09e74fb4e483bb281 *man/example.seqz.Rd
1289aacdf8835553e2029932b5064948 *man/gc.Rd
7abd12a6f38af576424d55417ec9bf0d *man/model_points.Rd
f14dff388f23e5bff09e926505787867 *man/mutations.Rd
3c90a936eb5f68993b38381955a71d48 *man/plotWindows.Rd
c35f64702b6f29bb8a5922366b5b4e25 *man/read_seqz.Rd
73f2cc0d3bf0c141919c9d2cea3aad44 *man/theoretical.Rd
a50ca8ef2629fb91193b2a0660337f43 *man/type_matrix.Rd
565da5a0ae9ca06b579cf9ce4d0c8f18 *man/windowValues.Rd
ebf3602ece02d98d51766ef8d2baac78 *man/workflow.Rd
ddd5ddf951a4a538c3d4cb03c3673c7a *tests/testthat.R
5c373f393040d14844556c63d0ee140d *tests/testthat/test.model.R
92691ae6d8ce244b626ab7ee777071b5 *tests/testthat/test.read.R
25228690501dd6c00834e253f2002e07 *vignettes/sequenza.Rmd