From 1430d4d00319ce2e42bea45c4da366de08212aff Mon Sep 17 00:00:00 2001 From: douyc Date: Thu, 20 Oct 2022 14:31:11 -0500 Subject: [PATCH] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 3e6c4a3..9c2a4b0 100644 --- a/README.md +++ b/README.md @@ -103,7 +103,7 @@ perl SEPepQuant.pl --database protein_database/GRCh38_latest_protein_NP_YP_XP.ch perl SEPepQuant.pl --database protein_database/GRCh38_latest_protein_NP_YP_XP.changeHeaderFormatUniprot.maxquant_contaminants.fa --fdr 0.01 --quant TMT --plex 11 --RefTag Mix --input testing_data/TMT --output testing_data_output_TMT ``` -By above commond lines, SEPepQuant will identify and quantify SEPEPs for the example label free and TMT data in the [testing_data](https://github.com/bzhanglab/SEPepQuant/tree/main/testing_data/) folder. SEPepQuant will creat output folders testing_data_output_LF and testing_data_output_TMT for output files for label free and TMT data, respectively. The running times for label free and TMT data are about 5 and 30 minutes. The same outputs are expected which are shwon in the [testing_data_output](https://github.com/bzhanglab/SEPepQuant/tree/main/testing_data_output/) folder. +By above commond lines, SEPepQuant will identify and quantify SEPEPs for the example label free and TMT data in the [testing_data](https://github.com/bzhanglab/SEPepQuant/tree/main/testing_data/) folder. SEPepQuant will creat output folders testing_data_output_LF and testing_data_output_TMT for label free and TMT data, respectively. The running times for label free and TMT data are about 5 and 30 minutes. The same outputs are expected which are shwon in the [testing_data_output](https://github.com/bzhanglab/SEPepQuant/tree/main/testing_data_output/) folder.