diff --git a/.github/workflows/validate-python.yml b/.github/workflows/validate-python.yml
new file mode 100644
index 00000000..7ef914b0
--- /dev/null
+++ b/.github/workflows/validate-python.yml
@@ -0,0 +1,26 @@
+name: Python validator
+
+on: [push, pull_request]
+
+jobs:
+ build:
+ name: Validate Data
+ runs-on: ubuntu-latest
+ steps:
+ - name: 'Checkout Code'
+ uses: actions/checkout@v4
+ with:
+ path: ./cbioportal-core
+ - name: 'Validate tests'
+ working-directory: ./cbioportal-core
+ run: |
+ docker run -v ${PWD}:/cbioportal-core python:3.6 /bin/sh -c '
+ cd cbioportal-core &&
+ pwd &&
+ ls -lart &&
+ pip install -r requirements.txt &&
+ export PYTHONPATH=/cbioportal-core/src/main/resources/scripts &&
+ cd src/test/scripts/ &&
+ python unit_tests_validate_data.py &&
+ python system_tests_validate_data.py &&
+ python system_tests_validate_studies.py'
\ No newline at end of file
diff --git a/requirements.txt b/requirements.txt
new file mode 100644
index 00000000..5cd1f3ba
--- /dev/null
+++ b/requirements.txt
@@ -0,0 +1,6 @@
+requests==2.20.0
+markupsafe==2.0.1
+Jinja2==2.11.3
+mysqlclient==2.1.0
+PyYAML==6.0.1
+dsnparse==0.1.15
diff --git a/src/test/scripts/test_data/study_es_0/result_report.html b/src/test/scripts/test_data/study_es_0/result_report.html
index a73fb794..0def1eae 100644
--- a/src/test/scripts/test_data/study_es_0/result_report.html
+++ b/src/test/scripts/test_data/study_es_0/result_report.html
@@ -142,7 +142,7 @@ General
Debug |
– |
– |
- Retrieving chromosome lengths from '/cbioportal/core/src/main/resources/scripts/importer/chromosome_sizes.json' |
+ Retrieving chromosome lengths from '/cbioportal-core/src/main/resources/scripts/importer/chromosome_sizes.json' |
– |
|
@@ -150,7 +150,7 @@ General
Debug |
– |
– |
- Retrieving chromosome lengths from '/cbioportal/core/src/main/resources/scripts/importer/chromosome_sizes.json' |
+ Retrieving chromosome lengths from '/cbioportal-core/src/main/resources/scripts/importer/chromosome_sizes.json' |
– |
|
diff --git a/src/test/scripts/test_data/study_es_1/result_report.html b/src/test/scripts/test_data/study_es_1/result_report.html
index 38588c01..9de476a2 100644
--- a/src/test/scripts/test_data/study_es_1/result_report.html
+++ b/src/test/scripts/test_data/study_es_1/result_report.html
@@ -36,7 +36,7 @@
- cBioPortal validation report: study in '/home/pnp300/git/cbioportal/core/src/test/scripts/test_data/study_es_1'
+ cBioPortal validation report: study in '/home/pnp300/git/cbioportal-core/src/test/scripts/test_data/study_es_1'
@@ -46,7 +46,7 @@