From 53840a757158c6e1ed7728a0d283550239a672e5 Mon Sep 17 00:00:00 2001 From: V Date: Mon, 13 Jan 2025 10:50:06 -0800 Subject: [PATCH 1/2] feat(jupyter-singleuser): Update image and packages for 2025 --- images/jupyter-singleuser/Dockerfile | 14 +- images/jupyter-singleuser/README.md | 14 + images/jupyter-singleuser/poetry.lock | 5957 ++++++++++++---------- images/jupyter-singleuser/pyproject.toml | 32 +- 4 files changed, 3234 insertions(+), 2783 deletions(-) diff --git a/images/jupyter-singleuser/Dockerfile b/images/jupyter-singleuser/Dockerfile index 627ce06e31..a1c4e248bd 100644 --- a/images/jupyter-singleuser/Dockerfile +++ b/images/jupyter-singleuser/Dockerfile @@ -1,6 +1,6 @@ FROM jupyter/datascience-notebook:python-3.11.6 -LABEL org.opencontainers.image.source https://github.com/cal-itp/data-infra +LABEL org.opencontainers.image.source=https://github.com/cal-itp/data-infra USER root RUN apt-get update @@ -15,8 +15,7 @@ RUN curl -fsSL https://cli.github.com/packages/githubcli-archive-keyring.gpg | s RUN echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/githubcli-archive-keyring.gpg] https://cli.github.com/packages stable main" | tee /etc/apt/sources.list.d/github-cli.list > /dev/null RUN apt update \ && apt install -y gh - - +RUN apt-get install -y gdal-bin libgdal-dev # for rasterio # create these ahead of time, then chown to to the notebook user ENV GCLOUD_HOME=/gcloud ENV POETRY_HOME="/poetry" @@ -29,9 +28,10 @@ USER $NB_UID RUN curl -sSL https://install.python-poetry.org | python3 - ENV PATH="$POETRY_HOME/bin:$PATH" - -RUN npm install -g --unsafe-perm=true --allow-root netlify-cli vega-cli vega-lite sql-language-server - +RUN npm install -g --unsafe-perm=true --allow-root netlify-cli +# RUN npm install -g --unsafe-perm=true --allow-root vega-cli # Can't get these to work +# RUN npm install -g --unsafe-perm=true --allow-root vega-lite +RUN npm install -g --unsafe-perm=true --allow-root sql-language-server # gcloud CLI https://cloud.google.com/sdk/docs/install#deb RUN cd $GCLOUD_HOME \ && curl -O https://dl.google.com/dl/cloudsdk/channels/rapid/downloads/google-cloud-cli-423.0.0-linux-x86_64.tar.gz \ @@ -42,7 +42,9 @@ ENV PATH="$GCLOUD_HOME/google-cloud-sdk/bin:$PATH" COPY ./pyproject.toml /reqs/pyproject.toml COPY ./poetry.lock /reqs/poetry.lock RUN poetry config virtualenvs.create false +# RUN gdalinfo --version # for debugging, use this to figure out which rasterio to support RUN cd /reqs && poetry install --with=shared_utils --with=portfolio +RUN cd /reqs && poetry show # print out the package versions for documentation RUN poetry config virtualenvs.create true ENV DBT_PROFILES_DIR=/home/jovyan/.dbt/ diff --git a/images/jupyter-singleuser/README.md b/images/jupyter-singleuser/README.md index bca477a588..71fb17b87e 100644 --- a/images/jupyter-singleuser/README.md +++ b/images/jupyter-singleuser/README.md @@ -7,10 +7,24 @@ via JupyterHub. A person with Docker set up locally can build a new version of the image at any time after making changes. +This can check for any significant security issues with this build +``` +pip install safety +safety scan +``` +Take the package versions from the build file and document with the PR. Do a cleanup step before you make a final build. + +``` +docker system prune -a # +docker build . 2>&1 | tee build.log +``` + + ```bash docker build -t ghcr.io/cal-itp/data-infra/jupyter-singleuser:[NEW VERSION TAG] . ``` + ## Deploying Changes to Production When changes are finalized, a new version number should be specified in [pyproject.toml](./pyproject.toml). When changes to this directory are merged into `main`, [a GitHub Action](../../.github/workflows/build-jupyter-singleuser-image.yml) automatically publishes an updated version of the image. A contributor with proper GHCR permissions can also manually deploy a new version of the image via the CLI: diff --git a/images/jupyter-singleuser/poetry.lock b/images/jupyter-singleuser/poetry.lock index 715997f48d..075e6f92eb 100644 --- a/images/jupyter-singleuser/poetry.lock +++ b/images/jupyter-singleuser/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.5 and should not be changed by hand. [[package]] name = "accessible-pygments" @@ -35,13 +35,13 @@ test = ["pytest (>=4.6)", "pytest-cov"] [[package]] name = "agate" -version = "1.11.0" +version = "1.12.0" description = "A data analysis library that is optimized for humans instead of machines." optional = false python-versions = "*" files = [ - {file = "agate-1.11.0-py2.py3-none-any.whl", hash = "sha256:1466df58f95b85df834ac96ae8bfd0eb65e0e7974c7bca41d1316389001b9536"}, - {file = "agate-1.11.0.tar.gz", hash = "sha256:57d9655bdebbfd61a71768202e1fb4847d6bba51f1800582da5c64c958952f4b"}, + {file = "agate-1.12.0-py2.py3-none-any.whl", hash = "sha256:7cef2a88d2af8ec2eda2ae07c1c92a33ca1fd7f0fe564de7c61e427b14f39540"}, + {file = "agate-1.12.0.tar.gz", hash = "sha256:7989841ac7de69e57389485c0b7cdab2e1a54c7480c629a76912bb7c331d991b"}, ] [package.dependencies] @@ -114,24 +114,28 @@ test = ["crate", "geojson", "pytest", "pytest-cov"] [[package]] name = "aiobotocore" -version = "2.13.0" +version = "2.17.0" description = "Async client 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+type = ["pytest-mypy"] [metadata] lock-version = "2.0" python-versions = "~3.11" -content-hash = "58aa99272b14194d3b4e0741890964561f4593ec6a3574d61f8bdea30305da90" +content-hash = "6557f41f59b36b447ef757fa16794760e2ae4ed0fe046d6d197ad6885a733a84" diff --git a/images/jupyter-singleuser/pyproject.toml b/images/jupyter-singleuser/pyproject.toml index 25069c44dc..52638b184d 100644 --- a/images/jupyter-singleuser/pyproject.toml +++ b/images/jupyter-singleuser/pyproject.toml @@ -1,25 +1,26 @@ [tool.poetry] name = "jupyter-singleuser" -version = "2024.5.24" +version = "2025.1.13" description = "" +package-mode = false authors = ["Soren Spicknall "] [tool.poetry.dependencies] python = "~3.11" -black = "22.3.0" +black = "24.10.0" intake = "0.6.4" intake-dcat = "0.4.0" -intake-geopandas = "0.3.0" -intake-parquet = "0.2.3" +intake-geopandas = ">=0.3.0" +intake-parquet = ">=0.2.3" ipyleaflet = "0.15.0" -jupytext = "1.13.5" -jupyterlab-code-formatter = "1.4.10" -voila = "0.3.6" -plotnine = "0.8.0" 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Image 2024.5.24" - description: "This is the next image we will deploy." + - display_name: "Prototype Image 2025.1.13" + description: "This is for testing the next image we will deploy." kubespawner_override: - image: ghcr.io/cal-itp/data-infra/jupyter-singleuser:2024.5.24 + image: ghcr.io/cal-itp/data-infra/jupyter-singleuser:2025.1.13 scheduling: userPods: nodeAffinity: