diff --git a/metakb/version.py b/metakb/version.py index a54c3dda..47828ae1 100644 --- a/metakb/version.py +++ b/metakb/version.py @@ -1,4 +1,4 @@ """MetaKB version""" # REQ: EACH TIME VERSION IS UPDATED, MUST ALSO UPDATE LAST_UPDATED -__version__ = "1.1.0-alpha.7" -LAST_UPDATED = "2022-05-04" +__version__ = "1.1.0-alpha.8" +LAST_UPDATED = "2022-05-25" diff --git a/requirements-dev.txt b/requirements-dev.txt index 9846427d..620f478d 100644 --- a/requirements-dev.txt +++ b/requirements-dev.txt @@ -1,222 +1,212 @@ -# -# These requirements were autogenerated by pipenv -# To regenerate from the project's Pipfile, run: -# -# pipenv lock --requirements --dev -# - -# Note: in pipenv 2020.x, "--dev" changed to emit both default and development -# requirements. To emit only development requirements, pass "--dev-only". - -i https://pypi.org/simple --e . -aiofiles==0.8.0; python_version >= '3.6' and python_version < '4.0' -anyio==3.5.0; python_full_version >= '3.6.2' +aiofiles==0.8.0 +anyio==3.6.1 appdirs==1.4.4 -appnope==0.1.3; sys_platform == 'darwin' -argcomplete==2.0.0; python_version >= '3.6' +appnope==0.1.3 +argcomplete==2.0.0 argh==0.26.2 -argon2-cffi-bindings==21.2.0; python_version >= '3.6' -argon2-cffi==21.3.0; python_version >= '3.6' -asgiref==3.5.0; python_version >= '3.7' +asgiref==3.5.2 asttokens==2.0.5 asyncclick==8.0.3.2 -asyncpg==0.25.0; python_version >= '3.6' -attrs==21.4.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -babel==2.9.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +asyncpg==0.25.0 +attrs==21.4.0 backcall==0.2.0 -backoff==1.11.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +backoff==2.0.1 backports-datetime-fromisoformat==1.0.0 -beautifulsoup4==4.10.0; python_version >= '3.1' -biocommons.seqrepo==0.6.5; python_version >= '3.5' -bioregistry==0.4.85; python_version >= '3.6' -bioutils==0.5.5; python_version >= '3.6' -bioversions==0.4.41; python_version >= '3.6' -bleach==4.1.0; python_version >= '3.6' -boto3==1.21.35 -botocore==1.24.35 +beautifulsoup4==4.11.1 +biocommons.seqrepo==0.6.5 +bioregistry[align]==0.5.6 +bioutils==0.5.5 +bioversions==0.5.2 +boto3==1.23.7 +botocore==1.26.7 bs4==0.0.1 cachier==1.5.4 -canonicaljson==1.6.0; python_version ~= '3.7' -cattrs==1.10.0; python_version >= '3.7' and python_version < '4.0' -certifi==2021.10.8 -cffi==1.15.0 -cfgv==3.3.1; python_full_version >= '3.6.1' -charset-normalizer==2.0.12; python_version >= '3' -chembl-downloader==0.3.0; python_version >= '3.7' +canonicaljson==1.6.1 +cattrs==1.10.0 +certifi==2022.5.18.1 +charset-normalizer==2.0.12 +chembl-downloader==0.3.0 civicpy==1.1.3 +click==8.1.3 click-default-group==1.2.2 -click==8.1.2; python_version >= '3.7' -coloredlogs==15.0.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -configparser==5.2.0; python_version >= '3.6' -coverage==6.3.2 -coveralls==3.3.1 -cssselect==1.1.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -cython==0.29.28; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' -dataclasses-json==0.5.7; python_version >= '3.6' -debugpy==1.6.0; python_version >= '3.7' -decorator==5.1.1; python_version >= '3.5' -defusedxml==0.7.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +coloredlogs==15.0.1 +configparser==5.2.0 +cssselect==1.1.0 +cython==0.29.30 +dataclasses-json==0.5.7 +decorator==5.1.1 +defusedxml==0.7.1 deprecation==2.1.0 disease-normalizer==0.2.12 -distlib==0.3.4 -docopt==0.6.2 -entrypoints==0.4; python_version >= '3.6' executing==0.8.3 fake-useragent==0.1.11 -fastapi==0.75.1 -fastjsonschema==2.15.3 -filelock==3.6.0; python_version >= '3.7' -flake8-docstrings==1.6.0 -flake8==4.0.1 +fastapi==0.78.0 ga4gh.vrs[extras]==0.8a0 ga4gh.vrsatile.pydantic==0.0.11 -gene-normalizer==0.1.25 +gene-normalizer==0.1.27 gffutils==0.10.1 -h11==0.13.0; python_version >= '3.6' +h11==0.13.0 hgvs==1.5.2 httptools==0.4.0 -humanfriendly==10.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -identify==2.4.12; python_version >= '3.7' -idna==3.3; python_version >= '3' -importlib-metadata==4.11.3; python_version < '3.10' -inflection==0.5.1; python_version >= '3.5' -iniconfig==1.1.1 -ipykernel==6.12.1 -ipython-genutils==0.2.0 -ipython==8.2.0; python_version >= '3.8' -ipywidgets==7.7.0 +humanfriendly==10.0 +idna==3.3 +importlib-metadata==4.11.4 +inflection==0.5.1 +ipython==8.3.0 isodate==0.6.1 -jedi==0.18.1; python_version >= '3.6' -jinja2==3.1.1; python_version >= '3.7' -jmespath==1.0.0; python_version >= '3.7' -json5==0.9.6 -jsondiff==1.3.1 +jedi==0.18.1 +jmespath==1.0.0 +jsondiff==2.0.0 jsonschema==3.2.0 -jupyter-client==7.2.2; python_version >= '3.7' -jupyter-console==6.4.3; python_version >= '3.6' -jupyter-core==4.9.2; python_version >= '3.6' -jupyter-server==1.16.0; python_version >= '3.7' -jupyter==1.0.0 -jupyterlab-pygments==0.1.2 -jupyterlab-server==2.12.0; python_version >= '3.7' -jupyterlab-widgets==1.1.0; python_version >= '3.6' -jupyterlab==3.3.3 -lxml==4.8.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -markdown==3.3.6; python_version >= '3.6' -markupsafe==2.1.1; python_version >= '3.7' +lxml==4.8.0 +markdown==3.3.7 +marshmallow==3.15.0 marshmallow-enum==1.5.1 -marshmallow==3.15.0; python_version >= '3.7' -matplotlib-inline==0.1.3; python_version >= '3.5' -mccabe==0.6.1 -mistune==0.8.4 -mock==4.0.3 -more-click==0.1.1; python_version >= '3.7' -mwoauth==0.3.7 +matplotlib-inline==0.1.3 +more-click==0.1.1 +mwoauth==0.3.8 mypy-extensions==0.4.3 -nbclassic==0.3.7; python_version >= '3.7' -nbclient==0.5.13; python_version >= '3.7' -nbconvert==6.4.5; python_version >= '3.7' -nbformat==5.3.0; python_version >= '3.7' -neo4j==4.4.2 -nest-asyncio==1.5.5; python_version >= '3.5' -networkx==2.7.1; python_version >= '3.8' -nodeenv==1.6.0 -notebook-shim==0.1.0; python_version >= '3.7' -notebook==6.4.10; python_version >= '3.6' -numpy==1.22.3; python_version >= '3.8' -oauthlib==3.2.0; python_version >= '3.6' -obonet==0.3.0; python_version >= '3.5' -owlready2==0.37; python_version >= '3.6' -packaging==21.3; python_version >= '3.6' -pandas==1.4.2; python_version >= '3.8' -pandocfilters==1.5.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +neo4j==4.4.3 +networkx==2.8.2 +numpy==1.22.4 +oauthlib==3.2.0 +obonet==0.3.0 +owlready2==0.37 +packaging==21.3 +pandas==1.4.2 parse==1.19.0 parsley==1.3 -parso==0.8.3; python_version >= '3.6' +parso==0.8.3 pathtools==0.1.2 -pexpect==4.8.0; sys_platform != 'win32' +pexpect==4.8.0 pickleshare==0.7.5 -platformdirs==2.5.1; python_version >= '3.7' -pluggy==1.0.0; python_version >= '3.6' -portalocker==2.4.0; python_version >= '3.5' -pre-commit==2.18.1 -prometheus-client==0.14.0; python_version >= '3.6' -prompt-toolkit==3.0.29; python_full_version >= '3.6.2' -psutil==5.9.0; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' -psycopg2==2.9.3; python_version >= '3.6' +portalocker==2.4.0 +prompt-toolkit==3.0.29 +psycopg2==2.9.3 ptyprocess==0.7.0 pure-eval==0.2.2 -py==1.11.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -pycodestyle==2.8.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -pycparser==2.21; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -pydantic==1.9.0 -pydocstyle==6.1.1; python_version >= '3.6' +pydantic==1.9.1 pyee==8.2.2 pyfaidx==0.6.4 -pyflakes==2.4.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -pygments==2.11.2; python_version >= '3.5' +pygments==2.12.0 pyjwt==2.4.0 pyliftover==0.4 -pyparsing==2.4.7; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' -pyppeteer==1.0.2; python_version >= '3.7' and python_version < '4.0' +pyparsing==2.4.7 +pyppeteer==1.0.2 pyquery==1.4.3 -pyrsistent==0.18.1; python_version >= '3.7' +pyrsistent==0.18.1 pysam==0.19.0 -pystow==0.4.0; python_version >= '3.7' -pytest-asyncio==0.18.3 -pytest-cov==3.0.0 -pytest==7.1.1 -python-dateutil==2.8.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pystow==0.4.3 +python-dateutil==2.8.2 python-jsonschema-objects==0.4.1 pytz==2022.1 -pyyaml==6.0; python_version >= '3.6' -pyzmq==22.3.0; python_version >= '3.6' -qtconsole==5.3.0; python_version >= '3.7' -qtpy==2.0.1; python_version >= '3.6' -rdflib==6.1.1; python_version >= '3.7' -requests-cache==0.9.3 -requests-ftp==0.3.1 -requests-html==0.10.0; python_version >= '3.6' -requests-oauthlib==1.3.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pyyaml==6.0 +rdflib==6.1.1 requests==2.27.1 -s3transfer==0.5.2; python_version >= '3.6' -send2trash==1.8.0 -setuptools==62.0.0; python_version >= '3.7' -simplejson==3.17.6; python_version >= '2.5' and python_version not in '3.0, 3.1, 3.2, 3.3' -six==1.16.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -sniffio==1.2.0; python_version >= '3.5' -snowballstemmer==2.2.0 -soupsieve==2.3.2; python_version >= '3.6' -sqlparse==0.4.2; python_version >= '3.5' +requests-cache==0.9.4 +requests-ftp==0.3.1 +requests-html==0.10.0 +requests-oauthlib==1.3.1 +s3transfer==0.5.2 +setuptools==62.3.2 +simplejson==3.17.6 +six==1.16.0 +sniffio==1.2.0 +soupsieve==2.3.2.post1 +sqlparse==0.4.2 stack-data==0.2.0 -starlette==0.17.1; python_version >= '3.6' +starlette==0.19.1 tabulate==0.8.9 -terminado==0.13.3; python_version >= '3.7' -testpath==0.6.0; python_version >= '3.5' thera-py==0.3.4 -toml==0.10.2; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' -tomli==2.0.1; python_version >= '3.7' -tornado==6.1; python_version >= '3.5' -tqdm==4.64.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -traitlets==5.1.1; python_version >= '3.7' -typing-extensions==4.1.1 +tqdm==4.64.0 +traitlets==5.2.1.post0 +typing-extensions==4.2.0 typing-inspect==0.7.1 -url-normalize==1.4.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5' -urllib3==1.26.9; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_version < '4.0' -uta-tools==0.0.15; python_version >= '3.8' +url-normalize==1.4.3 +urllib3==1.26.9 +uta-tools==0.0.17 uvicorn==0.17.6 uvloop==0.16.0 variation-normalizer==0.3.0 -vcfpy==0.13.3 -virtualenv==20.14.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +vcfpy==0.13.4 w3lib==1.22.0 -watchdog==2.1.7; python_version >= '3.6' +watchdog==2.1.8 wcwidth==0.2.5 +websockets==10.3 +wikibaseintegrator==0.11.0 +yoyo-migrations==7.3.2 +zipp==3.8.0 +argon2-cffi==21.3.0 +argon2-cffi-bindings==21.2.0 +babel==2.10.1 +bleach==5.0.0 +cffi==1.15.0 +cfgv==3.3.1 +coverage==6.4 +coveralls==3.3.1 +debugpy==1.6.0 +distlib==0.3.4 +docopt==0.6.2 +entrypoints==0.4 +fastjsonschema==2.15.3 +filelock==3.7.0 +flake8==4.0.1 +flake8-docstrings==1.6.0 +identify==2.5.1 +iniconfig==1.1.1 +ipykernel==6.13.0 +ipython-genutils==0.2.0 +ipywidgets==7.7.0 +jinja2==3.1.2 +json5==0.9.8 +jupyter==1.0.0 +jupyter-client==7.3.1 +jupyter-console==6.4.3 +jupyter-core==4.10.0 +jupyter-server==1.17.0 +jupyterlab==3.4.2 +jupyterlab-pygments==0.2.2 +jupyterlab-server==2.14.0 +jupyterlab-widgets==1.1.0 +markupsafe==2.1.1 +mccabe==0.6.1 +-e . +mistune==0.8.4 +mock==4.0.3 +nbclassic==0.3.7 +nbclient==0.6.3 +nbconvert==6.5.0 +nbformat==5.4.0 +nest-asyncio==1.5.5 +nodeenv==1.6.0 +notebook==6.4.11 +notebook-shim==0.1.0 +pandocfilters==1.5.0 +platformdirs==2.5.2 +pluggy==1.0.0 +pre-commit==2.19.0 +prometheus-client==0.14.1 +psutil==5.9.1 +py==1.11.0 +pycodestyle==2.8.0 +pycparser==2.21 +pydocstyle==6.1.1 +pyflakes==2.4.0 +pytest==7.1.2 +pytest-asyncio==0.18.3 +pytest-cov==3.0.0 +pyzmq==23.0.0 +qtconsole==5.3.0 +qtpy==2.1.0 +send2trash==1.8.0 +snowballstemmer==2.2.0 +terminado==0.15.0 +tinycss2==1.1.1 +toml==0.10.2 +tomli==2.0.1 +tornado==6.1 +virtualenv==20.14.1 webencodings==0.5.1 -websocket-client==1.3.2; python_version >= '3.7' -websockets==10.2 +websocket-client==1.3.2 widgetsnbextension==3.6.0 -wikibaseintegrator==0.11.0; python_version < '3.10' and python_version >= '3.7' -yoyo-migrations==7.3.2 -zipp==3.8.0; python_version >= '3.7' diff --git a/requirements.txt b/requirements.txt index 5933cbd2..9656b819 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,145 +1,139 @@ -# -# These requirements were autogenerated by pipenv -# To regenerate from the project's Pipfile, run: -# -# pipenv lock --requirements -# - -i https://pypi.org/simple -aiofiles==0.8.0; python_version >= '3.6' and python_version < '4.0' -anyio==3.5.0; python_full_version >= '3.6.2' +aiofiles==0.8.0 +anyio==3.6.1 appdirs==1.4.4 -appnope==0.1.3; sys_platform == 'darwin' -argcomplete==2.0.0; python_version >= '3.6' +appnope==0.1.3 +argcomplete==2.0.0 argh==0.26.2 -asgiref==3.5.0; python_version >= '3.7' +asgiref==3.5.2 asttokens==2.0.5 asyncclick==8.0.3.2 -asyncpg==0.25.0; python_version >= '3.6' -attrs==21.4.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +asyncpg==0.25.0 +attrs==21.4.0 backcall==0.2.0 -backoff==1.11.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' +backoff==2.0.1 backports-datetime-fromisoformat==1.0.0 -beautifulsoup4==4.10.0; python_version >= '3.1' -biocommons.seqrepo==0.6.5; python_version >= '3.5' -bioregistry==0.4.85; python_version >= '3.6' -bioutils==0.5.5; python_version >= '3.6' -bioversions==0.4.41; python_version >= '3.6' -boto3==1.21.35 -botocore==1.24.35 +beautifulsoup4==4.11.1 +biocommons.seqrepo==0.6.5 +bioregistry[align]==0.5.6 +bioutils==0.5.5 +bioversions==0.5.2 +boto3==1.23.7 +botocore==1.26.7 bs4==0.0.1 cachier==1.5.4 -canonicaljson==1.6.0; python_version ~= '3.7' -cattrs==1.10.0; python_version >= '3.7' and python_version < '4.0' -certifi==2021.10.8 -charset-normalizer==2.0.12; python_version >= '3' -chembl-downloader==0.3.0; python_version >= '3.7' +canonicaljson==1.6.1 +cattrs==1.10.0 +certifi==2022.5.18.1 +charset-normalizer==2.0.12 +chembl-downloader==0.3.0 civicpy==1.1.3 +click==8.1.3 click-default-group==1.2.2 -click==8.1.2; python_version >= '3.7' -coloredlogs==15.0.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -configparser==5.2.0; python_version >= '3.6' -cssselect==1.1.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -cython==0.29.28; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' -dataclasses-json==0.5.7; python_version >= '3.6' -decorator==5.1.1; python_version >= '3.5' +coloredlogs==15.0.1 +configparser==5.2.0 +cssselect==1.1.0 +cython==0.29.30 +dataclasses-json==0.5.7 +decorator==5.1.1 +defusedxml==0.7.1 deprecation==2.1.0 disease-normalizer==0.2.12 executing==0.8.3 fake-useragent==0.1.11 -fastapi==0.75.1 +fastapi==0.78.0 ga4gh.vrs[extras]==0.8a0 ga4gh.vrsatile.pydantic==0.0.11 -gene-normalizer==0.1.25 +gene-normalizer==0.1.27 gffutils==0.10.1 -h11==0.13.0; python_version >= '3.6' +h11==0.13.0 hgvs==1.5.2 httptools==0.4.0 -humanfriendly==10.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -idna==3.3; python_version >= '3' -importlib-metadata==4.11.3; python_version < '3.10' -inflection==0.5.1; python_version >= '3.5' -ipython==8.2.0; python_version >= '3.8' +humanfriendly==10.0 +idna==3.3 +importlib-metadata==4.11.4 +inflection==0.5.1 +ipython==8.3.0 isodate==0.6.1 -jedi==0.18.1; python_version >= '3.6' -jmespath==1.0.0; python_version >= '3.7' -jsondiff==1.3.1 +jedi==0.18.1 +jmespath==1.0.0 +jsondiff==2.0.0 jsonschema==3.2.0 -lxml==4.8.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' -markdown==3.3.6; python_version >= '3.6' +lxml==4.8.0 +markdown==3.3.7 +marshmallow==3.15.0 marshmallow-enum==1.5.1 -marshmallow==3.15.0; python_version >= '3.7' -matplotlib-inline==0.1.3; python_version >= '3.5' -more-click==0.1.1; python_version >= '3.7' -mwoauth==0.3.7 +matplotlib-inline==0.1.3 +more-click==0.1.1 +mwoauth==0.3.8 mypy-extensions==0.4.3 -neo4j==4.4.2 -networkx==2.7.1; python_version >= '3.8' -numpy==1.22.3; python_version >= '3.8' -oauthlib==3.2.0; python_version >= '3.6' -obonet==0.3.0; python_version >= '3.5' -owlready2==0.37; python_version >= '3.6' -packaging==21.3; python_version >= '3.6' -pandas==1.4.2; python_version >= '3.8' +neo4j==4.4.3 +networkx==2.8.2 +numpy==1.22.4 +oauthlib==3.2.0 +obonet==0.3.0 +owlready2==0.37 +packaging==21.3 +pandas==1.4.2 parse==1.19.0 parsley==1.3 -parso==0.8.3; python_version >= '3.6' +parso==0.8.3 pathtools==0.1.2 -pexpect==4.8.0; sys_platform != 'win32' +pexpect==4.8.0 pickleshare==0.7.5 -portalocker==2.4.0; python_version >= '3.5' -prompt-toolkit==3.0.29; python_full_version >= '3.6.2' -psycopg2==2.9.3; python_version >= '3.6' +portalocker==2.4.0 +prompt-toolkit==3.0.29 +psycopg2==2.9.3 ptyprocess==0.7.0 pure-eval==0.2.2 -pydantic==1.9.0 +pydantic==1.9.1 pyee==8.2.2 pyfaidx==0.6.4 -pygments==2.11.2; python_version >= '3.5' +pygments==2.12.0 pyjwt==2.4.0 pyliftover==0.4 -pyparsing==2.4.7; python_version >= '2.6' and python_version not in '3.0, 3.1, 3.2, 3.3' -pyppeteer==1.0.2; python_version >= '3.7' and python_version < '4.0' +pyparsing==2.4.7 +pyppeteer==1.0.2 pyquery==1.4.3 -pyrsistent==0.18.1; python_version >= '3.7' +pyrsistent==0.18.1 pysam==0.19.0 -pystow==0.4.0; python_version >= '3.7' -python-dateutil==2.8.2; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pystow==0.4.3 +python-dateutil==2.8.2 python-jsonschema-objects==0.4.1 pytz==2022.1 -pyyaml==6.0; python_version >= '3.6' -rdflib==6.1.1; python_version >= '3.7' -requests-cache==0.9.3 -requests-ftp==0.3.1 -requests-html==0.10.0; python_version >= '3.6' -requests-oauthlib==1.3.1; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' +pyyaml==6.0 +rdflib==6.1.1 requests==2.27.1 -s3transfer==0.5.2; python_version >= '3.6' -setuptools==62.0.0; python_version >= '3.7' -simplejson==3.17.6; python_version >= '2.5' and python_version not in '3.0, 3.1, 3.2, 3.3' -six==1.16.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -sniffio==1.2.0; python_version >= '3.5' -soupsieve==2.3.2; python_version >= '3.6' -sqlparse==0.4.2; python_version >= '3.5' +requests-cache==0.9.4 +requests-ftp==0.3.1 +requests-html==0.10.0 +requests-oauthlib==1.3.1 +s3transfer==0.5.2 +setuptools==62.3.2 +simplejson==3.17.6 +six==1.16.0 +sniffio==1.2.0 +soupsieve==2.3.2.post1 +sqlparse==0.4.2 stack-data==0.2.0 -starlette==0.17.1; python_version >= '3.6' +starlette==0.19.1 tabulate==0.8.9 thera-py==0.3.4 -tqdm==4.64.0; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3' -traitlets==5.1.1; python_version >= '3.7' -typing-extensions==4.1.1 +tqdm==4.64.0 +traitlets==5.2.1.post0 +typing-extensions==4.2.0 typing-inspect==0.7.1 -url-normalize==1.4.3; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4, 3.5' -urllib3==1.26.9; python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2, 3.3, 3.4' and python_version < '4.0' -uta-tools==0.0.15; python_version >= '3.8' +url-normalize==1.4.3 +urllib3==1.26.9 +uta-tools==0.0.17 uvicorn==0.17.6 uvloop==0.16.0 variation-normalizer==0.3.0 -vcfpy==0.13.3 +vcfpy==0.13.4 w3lib==1.22.0 -watchdog==2.1.7; python_version >= '3.6' +watchdog==2.1.8 wcwidth==0.2.5 -websockets==10.2 -wikibaseintegrator==0.11.0; python_version < '3.10' and python_version >= '3.7' +websockets==10.3 +wikibaseintegrator==0.11.0 yoyo-migrations==7.3.2 -zipp==3.8.0; python_version >= '3.7' +zipp==3.8.0