From 8f5dd466b2844b0ecf6ffcecb60cefc484bc071b Mon Sep 17 00:00:00 2001 From: Geert-Jan Huizing <30904288+gjhuizing@users.noreply.github.com> Date: Mon, 6 Nov 2023 18:03:51 +0100 Subject: [PATCH] Update README.md --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index 970e40f..e608497 100644 --- a/README.md +++ b/README.md @@ -16,7 +16,7 @@ Mowgli is implemented as a Python package seamlessly integrated within the scver ### via PyPI (recommended) -On all operating systems, the easiest way to install Mowgli is via PyPI. Installation should typically take a minute and is continuously tested with Python 3.8 on an Ubuntu virtual machine. +On all operating systems, the easiest way to install Mowgli is via PyPI. Installation should typically take a minute and is continuously tested with Python 3.10 on an Ubuntu virtual machine. ```bash pip install mowgli @@ -31,11 +31,11 @@ pip install ./Mowgli/ ## Getting started -Mowgli takes as an input a Muon object and populates its `obsm` and `uns` fiels with the embeddings and dictionaries, respectively. Visit [mowgli.rtfd.io](https://mowgli.rtfd.io/) for more documentation and tutorials. +Mowgli takes as an input a Muon object and populates its `obsm` and `uns` fields with the embeddings and dictionaries, respectively. Visit [mowgli.rtfd.io](https://mowgli.rtfd.io/) for more documentation and tutorials. You may download a preprocessed 10X Multiome demo dataset [here](https://figshare.com/s/4c8e72cbb188d8e1cce8). -A GPU is not required for small datasets, but is strongly recommmended above 1,000 cells. On CPU, the [cell lines demo](https://mowgli.readthedocs.io/en/latest/vignettes/Liu%20cell%20lines.html) (206 cells) should run in under 5 minutes and the [PBMC demo](https://mowgli.readthedocs.io/en/latest/vignettes/PBMC.html) (500 cells) should run in under 10 minutes (tested on a Ubuntu 20.04 machine with an 11th gen i7 processor). +A GPU is not required for small datasets, but is strongly recommended above 1,000 cells. On CPU, the [cell lines demo](https://mowgli.readthedocs.io/en/latest/vignettes/Liu%20cell%20lines.html) (206 cells) should run in under 5 minutes and the [PBMC demo](https://mowgli.readthedocs.io/en/latest/vignettes/PBMC.html) (500 cells) should run in under 10 minutes (tested on a Ubuntu 20.04 machine with an 11th gen i7 processor). ```python import mowgli