Releases: cantinilab/scPRINT
Releases · cantinilab/scPRINT
2.1.2
2.1.1
Jérémie Kalfon (13):
Update pyproject.toml
Update .gitmodules
Update denoise.py
Update README.md
Update pyproject.toml
Update README.md
Update README.md
Merge branch 'main' into dev
Merge pull request #13 from cantinilab/dev
Update README.md
Update README.md
Merge pull request #15 from cantinilab/dev
Update pyproject.toml
jkobject (52):
wip
adding a TF-weighted masker, GQA, cross attention, req depth, variable depth, variable context, masking of noisy expr,
improving versions
WIP running some notebooks
learning an embedding for masked expression
introducing genelists for the two tasks
introducing genelists for the two tasks
many debugs but wip on gqa
making GQA work with flashattention
Merge branch 'depth_manage' into dev
adding flashattention package
adding simpler flash, cell /gene block separation (WIP), GQA, depth encoding at the output level, code cleanups,
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
dbug
finish setting up the ablation study
introducing fsq
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
release: version 2.0.0 🚀
adding new version
setting up ablation studies
managing many automated requeuing
working on many model versions
debug extracting gene networks from cell sep model
Merge commit '7033a0c2aadea920fab87ded648a0e6c7516c0c8' into dev
update
nothing really
solving an LR mystery
removing useless prints
nothing really
cleanup
Merge remote-tracking branch 'origin/main' into dev
removing stochastic weight averaging
some small debugs
adding step setter
debug
making it work
making it work
solving issues with input
debug metacell
adding debugs stuff
tiny update
adding to gitignore
new dep
solving the remaining issues
one more debug
shoudl be all good now
adding good deletion
release: version 2.1.0 🚀
debug makefile and website
adding some info
adding to pyproject
release: version 2.1.1 🚀
maestro-jk (23):
adding version
nothing really
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
Merge branch 'main' into dev
setting better parameters
debug
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
wip on new version, debugging mvc, not working ddp timeout, update, improvement in loss comp
debugging and improving side losses, debugging when no class, and validate on large datasets, debug timeout multigpus, better training params
some slight updates
better params
adding more parameters and choices for ablation study. updating other base parameters
debug when no cell embeddings. better naming, version debug
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
cleanups
remove issue
last debugs
last cleanup
all well and good
cleanup
cleanup
debug and ruff lint
making scPRINT work too
1.6.4
jkobject (1):
fix: update scDataLoader dependency version
2.1.0
Jérémie Kalfon (4):
Update README.md
Update README.md
Merge pull request #15 from cantinilab/dev
Update pyproject.toml
jkobject (30):
adding new version
setting up ablation studies
managing many automated requeuing
working on many model versions
debug extracting gene networks from cell sep model
Merge commit '7033a0c2aadea920fab87ded648a0e6c7516c0c8' into dev
update
nothing really
solving an LR mystery
removing useless prints
nothing really
cleanup
Merge remote-tracking branch 'origin/main' into dev
removing stochastic weight averaging
some small debugs
adding step setter
debug
making it work
making it work
solving issues with input
debug metacell
adding debugs stuff
tiny update
adding to gitignore
new dep
solving the remaining issues
one more debug
shoudl be all good now
adding good deletion
release: version 2.1.0 🚀
2.0.0
Jérémie Kalfon (9):
Update pyproject.toml
Update .gitmodules
Update denoise.py
Update README.md
Update pyproject.toml
Update README.md
Update README.md
Merge branch 'main' into dev
Merge pull request #13 from cantinilab/dev
jkobject (18):
wip
adding a TF-weighted masker, GQA, cross attention, req depth, variable depth, variable context, masking of noisy expr,
improving versions
WIP running some notebooks
learning an embedding for masked expression
introducing genelists for the two tasks
introducing genelists for the two tasks
many debugs but wip on gqa
making GQA work with flashattention
Merge branch 'depth_manage' into dev
adding flashattention package
adding simpler flash, cell /gene block separation (WIP), GQA, depth encoding at the output level, code cleanups,
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
dbug
finish setting up the ablation study
introducing fsq
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
release: version 2.0.0 🚀
maestro-jk (23):
adding version
nothing really
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
Merge branch 'main' into dev
setting better parameters
debug
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
wip on new version, debugging mvc, not working ddp timeout, update, improvement in loss comp
debugging and improving side losses, debugging when no class, and validate on large datasets, debug timeout multigpus, better training params
some slight updates
better params
adding more parameters and choices for ablation study. updating other base parameters
debug when no cell embeddings. better naming, version debug
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
cleanups
remove issue
last debugs
last cleanup
all well and good
cleanup
cleanup
debug and ruff lint
making scPRINT work too
1.6.3
release: version 1.6.3 🚀
1.6.2
jkobject (10):
changing some names, discarding files, adding deepsem runs, doing some tests
continuing to run notebooks
debug notebooks
finishing all the runs
small improvements and adding more bench
Merge branch 'dev' of https://github.com/cantinilab/scPRINT into dev
Merge remote-tracking branch 'cantini/dev' into main
release: version 1.6.1 🚀
debug
release: version 1.6.2 🚀
maestro-jk (1):
some runs and adding datamaplot
