From 207de7fde6b02d504d167ef428a57eb86c1bb3d5 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 12 Dec 2023 01:20:20 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : a78e535a90627ae0c73d0e92f4c5453fcacfaf5c
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2023-11-28 01:10:29 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : b28586e6f4ac04c313f2348e105ee40de975048b
Branch  : main
Author  : Charlotte Soneson <charlottesoneson@gmail.com>
Time    : 2023-11-07 06:42:38 +0000
Message : Merge pull request #97 from carpentries-incubator/update/packages

Update 48 packages
---
 01-intro-to-rnaseq.html                    |  2 +-
 02-setup.html                              |  6 ++---
 03-import-annotate.html                    |  2 +-
 04-exploratory-qc.html                     |  2 +-
 05-differential-expression.html            |  8 +++----
 06-extra-design.html                       |  6 ++---
 07-gene-set-analysis.html                  |  4 ++--
 08-next-steps.html                         |  2 +-
 404.html                                   |  4 ++--
 CODE_OF_CONDUCT.html                       |  2 +-
 LICENSE.html                               |  2 +-
 aio.html                                   | 20 ++++++++---------
 discuss.html                               |  2 +-
 images.html                                |  4 ++--
 index.html                                 |  4 ++--
 instructor-notes.html                      |  4 ++--
 instructor/01-intro-to-rnaseq.html         |  2 +-
 instructor/02-setup.html                   |  6 ++---
 instructor/03-import-annotate.html         |  2 +-
 instructor/04-exploratory-qc.html          |  2 +-
 instructor/05-differential-expression.html | 14 ++++++------
 instructor/06-extra-design.html            |  6 ++---
 instructor/07-gene-set-analysis.html       |  4 ++--
 instructor/08-next-steps.html              |  2 +-
 instructor/404.html                        |  4 ++--
 instructor/CODE_OF_CONDUCT.html            |  2 +-
 instructor/LICENSE.html                    |  2 +-
 instructor/aio.html                        | 26 +++++++++++-----------
 instructor/discuss.html                    |  2 +-
 instructor/images.html                     |  4 ++--
 instructor/index.html                      |  4 ++--
 instructor/instructor-notes.html           |  4 ++--
 instructor/key-points.html                 |  4 ++--
 instructor/profiles.html                   |  4 ++--
 instructor/reference.html                  |  2 +-
 key-points.html                            |  4 ++--
 pkgdown.yml                                |  2 +-
 profiles.html                              |  4 ++--
 reference.html                             |  2 +-
 39 files changed, 91 insertions(+), 91 deletions(-)

diff --git a/01-intro-to-rnaseq.html b/01-intro-to-rnaseq.html
index 81660d32..31ed5eee 100644
--- a/01-intro-to-rnaseq.html
+++ b/01-intro-to-rnaseq.html
@@ -661,7 +661,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/01-intro-to-rnaseq.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/02-setup.html b/02-setup.html
index adb97309..e14e4622 100644
--- a/02-setup.html
+++ b/02-setup.html
@@ -435,7 +435,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <figure style="text-align: center"><img src="fig/02_setup/folders_working_dir.png" alt="Your working directory should look like this" width="1221" class="figure mx-auto d-block"><figcaption>
 Your working directory should look like this
@@ -560,7 +560,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb2">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -657,7 +657,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/02-setup.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/03-import-annotate.html b/03-import-annotate.html
index 178f5749..f0cdf478 100644
--- a/03-import-annotate.html
+++ b/03-import-annotate.html
@@ -1432,7 +1432,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/03-import-annotate.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/04-exploratory-qc.html b/04-exploratory-qc.html
index 1b4deb19..93c70c53 100644
--- a/04-exploratory-qc.html
+++ b/04-exploratory-qc.html
@@ -950,7 +950,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/04-exploratory-qc.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/05-differential-expression.html b/05-differential-expression.html
index 140425e3..c95e8da7 100644
--- a/05-differential-expression.html
+++ b/05-differential-expression.html
@@ -588,7 +588,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>In the lesson example the last variable of the design formula is
 <code>time</code>. The <strong>reference level</strong> (first in
@@ -695,7 +695,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb22">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -838,7 +838,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb30">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1031,7 +1031,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/05-differential-expression.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/06-extra-design.html b/06-extra-design.html
index 2b1bdb4a..c6ee7bc2 100644
--- a/06-extra-design.html
+++ b/06-extra-design.html
@@ -659,7 +659,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb19">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -748,7 +748,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb25">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2003,7 +2003,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/06-extra-design.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/07-gene-set-analysis.html b/07-gene-set-analysis.html
index 840a3c3a..abc4e504 100644
--- a/07-gene-set-analysis.html
+++ b/07-gene-set-analysis.html
@@ -1003,7 +1003,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb38">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -2649,7 +2649,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/07-gene-set-analysis.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/08-next-steps.html b/08-next-steps.html
index 2476ed60..d628e5a8 100644
--- a/08-next-steps.html
+++ b/08-next-steps.html
@@ -433,7 +433,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/08-next-steps.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index ea9ec1ec..d29b570b 100644
--- a/404.html
+++ b/404.html
@@ -342,8 +342,8 @@ <h1>Page not found</h1>
   "url": "https://carpentries-incubator.github.io/bioc-rnaseq/404.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/404.html",
   "dateCreated": "2020-09-15",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 0231c90a..7d58005f 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -346,7 +346,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/CODE_OF_CONDUCT.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index db5dbc82..93f72a54 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -397,7 +397,7 @@ <h1>Licenses</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/LICENSE.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 0034a89d..7bd8bbc2 100644
--- a/aio.html
+++ b/aio.html
@@ -834,7 +834,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <figure style="text-align: center"><img src="fig/02_setup/folders_working_dir.png" alt="Your working directory should look like this" width="1221" class="figure mx-auto d-block"><figcaption>
 Your working directory should look like this
@@ -980,7 +980,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb2">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -3088,7 +3088,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>In the lesson example the last variable of the design formula is
 <code>time</code>. The <strong>reference level</strong> (first in
@@ -3195,7 +3195,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
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@@ -3339,7 +3339,7 @@ <h4 class="accordion-header" id="headingSolution3">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb30">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -3852,7 +3852,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb19">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -3942,7 +3942,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb25">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -5916,7 +5916,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb38">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -7726,8 +7726,8 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "url": "https://carpentries-incubator.github.io/bioc-rnaseq/aio.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/aio.html",
   "dateCreated": "2020-09-15",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 78be17be..1fc6197a 100644
--- a/discuss.html
+++ b/discuss.html
@@ -339,7 +339,7 @@ <h1>Discussion</h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/discuss.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index b053494c..748c3912 100644
--- a/images.html
+++ b/images.html
@@ -522,8 +522,8 @@ <h3 id="07-gene-set-analysis-figure-12">Figure 12</h3>
   "url": "https://carpentries-incubator.github.io/bioc-rnaseq/images.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/images.html",
   "dateCreated": "2020-09-15",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 76d162ac..cbb6a3d8 100644
--- a/index.html
+++ b/index.html
@@ -384,8 +384,8 @@ <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i
   "url": "https://carpentries-incubator.github.io/bioc-rnaseq/index.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/index.html",
   "dateCreated": "2020-09-15",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor-notes.html b/instructor-notes.html
index e8280900..7ce22295 100644
--- a/instructor-notes.html
+++ b/instructor-notes.html
@@ -384,8 +384,8 @@ <h1>Instructor Notes</h1>
   "url": "https://carpentries-incubator.github.io/bioc-rnaseq/instructor-notes.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/instructor-notes.html",
   "dateCreated": "2020-09-15",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/01-intro-to-rnaseq.html b/instructor/01-intro-to-rnaseq.html
index 1761e9f7..a90ae87b 100644
--- a/instructor/01-intro-to-rnaseq.html
+++ b/instructor/01-intro-to-rnaseq.html
@@ -663,7 +663,7 @@ <h3 class="callout-title">Keypoints<a class="anchor" aria-label="anchor" href="#
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/instructor/01-intro-to-rnaseq.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/instructor/02-setup.html b/instructor/02-setup.html
index 532c71db..36aa172a 100644
--- a/instructor/02-setup.html
+++ b/instructor/02-setup.html
@@ -437,7 +437,7 @@ <h4 class="accordion-header" id="headingSolution1">
   Show me the solution
   </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <figure style="text-align: center"><img src="../fig/02_setup/folders_working_dir.png" alt="Your working directory should look like this" width="1221" class="figure mx-auto d-block"><figcaption>
 Your working directory should look like this
@@ -562,7 +562,7 @@ <h4 class="accordion-header" id="headingSolution2">
   Show me the solution
   </h4>
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   </script><script>
diff --git a/key-points.html b/key-points.html
index 128d90ca..e34b324f 100644
--- a/key-points.html
+++ b/key-points.html
@@ -461,8 +461,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://carpentries-incubator.github.io/bioc-rnaseq/key-points.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/key-points.html",
   "dateCreated": "2020-09-15",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index a1e4edf9..961a2dba 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,5 +2,5 @@ pandoc: 2.19.2
 pkgdown: 2.0.7
 pkgdown_sha: ~
 articles: {}
-last_built: 2023-12-05T01:11Z
+last_built: 2023-12-12T01:20Z
 
diff --git a/profiles.html b/profiles.html
index ebca8b4a..5ae7cfa8 100644
--- a/profiles.html
+++ b/profiles.html
@@ -384,8 +384,8 @@ <h1>Learner Profiles</h1>
   "url": "https://carpentries-incubator.github.io/bioc-rnaseq/profiles.html",
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/profiles.html",
   "dateCreated": "2020-09-15",
-  "dateModified": "2023-12-05",
-  "datePublished": "2023-12-05"
+  "dateModified": "2023-12-12",
+  "datePublished": "2023-12-12"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 9c8fa20e..54f55593 100644
--- a/reference.html
+++ b/reference.html
@@ -339,7 +339,7 @@ <h1></h1>
   "identifier": "https://carpentries-incubator.github.io/bioc-rnaseq/reference.html",
   "dateCreated": "2020-09-15",
   "dateModified": "2023-11-21",
-  "datePublished": "2023-12-05"
+  "datePublished": "2023-12-12"
 }
 
   </script><script>