setup.md

title	tools-needed
Setup	editor python jupyterlab

For Windows users: Install git for windows following: Git for Windows. Install Anaconda following: Python.

Use anaconda to install the following modules:

conda install -y dask[complete]
conda install -y memory_profiler
conda install -y matplotlib
conda install -y numba
conda install -y python-graphviz
conda install -y nltk
conda install -y jupyterlab

FIXME: how to add snakemake? It's in bioconda. Options:

• add bioconda as a low priority channel: conda config --append channels bioconda
• use pip for snakemake

FIXME: should pip/poetry be mentioned as an alternative?

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