diff --git a/DESCRIPTION b/DESCRIPTION index 5b4132a2..ff94c08f 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,24 +1,24 @@ Package: growthcleanr Type: Package Title: Data Cleaner for Anthropometric Measurements -Version: 2.1.0 +Version: 2.1.1 Authors@R: c( - person("Daymont","Carrie", email = "cdaymont@pennstatehealth.psu.edu", role = c("ctb","cre")), - person("Grundmeier","Robert", role = "aut"), - person("Miller","Jeffrey", role = "aut"), - person("Campos","Diego", role = "aut"), - person("Chudnov","Dan", role = "ctb"), - person("De los Santos","Hannah", email = "hdelossantos@mitre.org", role = c("ctb")), - person("Cao","Lusha", role = "ctb"), - person("Silva","Steffani", role = "ctb"), - person("Zhang","Hanzhe", role = "ctb"), - person("Boyas","Matt", role = "ctb"), - person("Freedman","David", role = "ctb"), - person("Achilleos","Andreas", role = "ctb"), - person("Butts","Jessica", role = "ctb"), - person("Nguyen","Sheila", role = "ctb"), - person("Soleymani","Taraneh", role = "ctb"), - person("Olivier","Max", role = "ctb") + person("Carrie", "Daymont", email = "cdaymont@pennstatehealth.psu.edu", role = c("ctb","cre")), + person("Robert", "Grundmeier", role = "aut"), + person("Jeffrey", "Miller", role = "aut"), + person("Diego", "Campos", role = "aut"), + person("Dan", "Chudnov", email = "dlchudnov@mitre.org", role = "ctb"), + person("Hannah", "De los Santos", email = "hdelossantos@mitre.org", role = c("ctb")), + person("Lusha", "Cao", role = "ctb"), + person("Steffani", "Silva", role = "ctb"), + person("Hanzhe", "Zhang", role = "ctb"), + person("Matt", "Boyas", role = "ctb"), + person("David", "Freedman", role = "ctb"), + person("Andreas", "Achilleos", role = "ctb"), + person("Jessica", "Butts", role = "ctb"), + person("Sheila", "Nguyen", role = "ctb"), + person("Taraneh", "Soleymani", role = "ctb"), + person("Max", "Olivier", role = "ctb") ) Description: Identifies implausible anthropometric (e.g., height, weight) measurements in irregularly spaced longitudinal datasets, such as those from electronic health records. diff --git a/NEWS.md b/NEWS.md index 2c669da3..e97381af 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,13 @@ +# growthcleanr 2.1.1 - 2023-03-01 + +## Changed + +- Fixed missing adult measurements to be labeled "Missing" in output (#119) +- Added tests for missingness in adult output +- Fixed missing "-RV" codes in adult output +- Corrected contributor names in DESCRIPTION (#120) +- Added email for Dan Chudnov in DESCRIPTION (#95) + # growthcleanr 2.1.0 - 2023-02-03 ## Added diff --git a/R/growth.R b/R/growth.R index ab471954..7aa85c83 100644 --- a/R/growth.R +++ b/R/growth.R @@ -160,6 +160,7 @@ cleangrowth <- function(subjid, N <- age_years <- batch <- exclude <- index <- line <- NULL newbatch <- sd.median <- sd.orig <- tanner.months <- tbc.sd <- NULL v <- v_adult <- whoagegrp.ht <- whoagegrp_ht <- z.orig <- NULL + result <- NULL # preprocessing ---- @@ -239,8 +240,11 @@ cleangrowth <- function(subjid, "Include", "Exclude-Adult-BIV", "Exclude-Adult-Hundreds", + "Exclude-Adult-Hundreds-RV", "Exclude-Adult-Unit-Errors", + "Exclude-Adult-Unit-Errors-RV", "Exclude-Adult-Transpositions", + "Exclude-Adult-Transpositions-RV", "Exclude-Adult-Weight-Cap-Identical", "Exclude-Adult-Weight-Cap", "Exclude-Adult-Swapped-Measurements", @@ -249,6 +253,7 @@ cleangrowth <- function(subjid, "Exclude-Adult-Distinct-Pairs", "Exclude-Adult-Distinct-3-Or-More", "Exclude-Adult-EWMA-Extreme", + "Exclude-Adult-EWMA-Extreme-RV", "Exclude-Adult-Distinct-Ordered-Pairs", "Exclude-Adult-EWMA-Moderate", "Exclude-Adult-Possibly-Impacted-By-Weight-Cap", @@ -652,8 +657,13 @@ cleangrowth <- function(subjid, .paropts = list(.packages = "data.table"), weight_cap = weight_cap ) + + res <- as.data.table(res) } + # replace result with missing if measurement or agedays are missing + res[is.na(measurement) | agedays < 0, result := "Missing"] + if (parallel){ stopCluster(cl) } diff --git a/cran-comments.md b/cran-comments.md index d94554f8..340ea866 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,3 +1,13 @@ +# CRAN submission growthcleanr 2.1.1 + +## R CMD check results +There were no ERRORs, WARNINGs, or NOTEs. + +## Downstream dependencies +There are currently no downstream dependencies for this package. + +# Previous Submissions + # CRAN submission growthcleanr 2.1.0 ## R CMD check results @@ -19,8 +29,6 @@ We have addressed each of the notes in the manual test as below: We have updated the citation accordingly. -# Previous Submissions - # CRAN submission growthcleanr 2.1.0 (1) ## R CMD check results diff --git a/docs/404.html b/docs/404.html index 09c0ac49..923920a9 100644 --- a/docs/404.html +++ b/docs/404.html @@ -32,7 +32,7 @@ growthcleanr - 2.1.0 + 2.1.1 @@ -128,7 +128,7 @@

Page not found (404)