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tutorial.sorrentum_jupyter_container.md

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Sorrentum Jupyter container

  • We use Python and Jupyter for all the research projects

  • IPython Notebook / Jupyter is an enhanced command shell for Python, that offers enhanced introspection, rich media, tab completion, and history

  • IPython Notebook started as a web browser-based interface to IPython and proved especially popular with data scientists

  • A few years ago, the Notebook functionality was forked off as a separate project, called Jupyter. Jupyter provides support for many other languages in addition to Python

Building the container

  • Build with 
    > docker_build.sh

Running Jupyter

  • We have built a sorrentum_jupyter container that allows to run Jupyter with all the needed dependencies

  • To start Jupyter do:

    > cd $GIT_ROOT/sorrentum_sandbox/examples
> docker_jupyter.sh
++ git rev-parse --show-toplevel
+ GIT_ROOT=/Users/saggese/src/sorrentum1
+ REPO_NAME=sorrentum
+ IMAGE_NAME=jupyter
+ FULL_IMAGE_NAME=sorrentum/jupyter
+ docker image ls sorrentum/jupyter
REPOSITORY   TAG       IMAGE ID   CREATED   SIZE
+ CONTAINER_NAME=jupyter
+ docker run --rm -ti --name jupyter -p 8888:8888 -v /Users/saggese/src/sorrentum1/sorrentum_sandbox:/data sorrentum/jupyter /data/devops/jupyter_docker/run_jupyter.sh
Unable to find image 'sorrentum/jupyter:latest' locally
latest: Pulling from sorrentum/jupyter
677076032cca: Already exists
4c9de205ab0e: Pull complete
...
7d1edc5584d3: Pull complete
ac0e0cb28d27: Pull complete
Digest: sha256:3be2a9bcbae4919d532d891d76ddb57cd8a13d0a8dd518cbdd5e7ed6ab3fa30a
Status: Downloaded newer image for sorrentum/jupyter:latest
+ jupyter-notebook --port=8888 --no-browser --ip=0.0.0.0 --allow-root --NotebookApp.token= --NotebookApp.password=
[I 16:29:44.061 NotebookApp] Writing notebook server cookie secret to /root/.local/share/jupyter/runtime/notebook_cookie_secret
[I 16:29:44.061 NotebookApp] Authentication of /metrics is OFF, since other authentication is disabled.
[W 16:29:44.273 NotebookApp] All authentication is disabled.  Anyone who can connect to this server will be able to run code.
[I 16:29:44.276 NotebookApp] [jupyter_nbextensions_configurator] enabled 0.6.1
[I 16:29:44.284 NotebookApp] Serving notebooks from local directory: /
[I 16:29:44.284 NotebookApp] Jupyter Notebook 6.5.2 is running at:
[I 16:29:44.284 NotebookApp] http://917f7e30d7c6:8888/
[I 16:29:44.284 NotebookApp] Use Control-C to stop this server and shut down all kernels (twice to skip confirmation).

  • This will start a Jupyter server in the container listening on port 8888

    • As discussed above, the Docker start command maps the 8888 port on the container to the 8888 port on the host
    • You can access it from the host, by pointing your browser to localhost:8888 or http://127.0.0.1:8888

  • Navigate to /data to see the directories mounted on Docker

  • Now you can execute notebooks

Running bash

  • You can run bash in the Sorrentum Jupyter container with: 
    > docker_bash.sh