nf-core/multiplesequencealign: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

v0.1.0dev - [date]

Initial release of nf-core/multiplesequencealign, created with the nf-core template.

[#29] - Add FAMSA_ALIGN module
[#38] - Add FAMSA_GUIDETREE module
[#42] - Add MAFFT module
[#51] - Add CLUSTALO module
[#41] - Add KALIGN module
[#48] - Integrate NF-VALIDATION PLUGIN
[#45] - Add module LearnMSA
[#35] - Add module Tcoffee_align
[#60] - Add module Tcoffee3D_align and handle structures input
[#35] - Add module MUSCLE5_SUPER5
[#59] - Add support for passing structure template in samplesheet.
[#77] - Add module zip
[#93] - Add multiqc basic support. Add custom params validation. Add basic shiny app.
[#100] - Add support for optional stats and evals. Clean tests.
[#110] - Add Readme documentation. Add nf-test for the pipeline.
[#76] - Add reading of trace files for shiny app.
[#99] - Add check for conflicting input parameters for stats and eval.
[#117] - Add data for full datasets.
[#90] - Add TCS evaluation metric.
[#89] - Add collection of plddt metrics in stats subworkflow.
[#96] - Add collection of number of gaps in eval subworkflow.
[#84] - Update Metromap

[#61] - Fix filtering of unique guidetree compuation instructions: no double GT computation.
[#57] - Update naming in the naming of the meta channels.
[#66] - README: add new metromap and available tool list.
[#54] - Update modules versions from nf-core tools.
[#80] - Update modules versions from nf-core tools with nf-test.
[#32] - Update Stats workflow with nf-core modules for merging.
[#81] - Update Eval workflow with nf-core modules for merging.
[#111] - Fix linting warnings (mostly versions)
[#134] - Code revision for release preparation