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biolink-model.shexj
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biolink-model.shexj
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{
"type": "Schema",
"@context": [
"http://www.w3.org/ns/shex.jsonld",
{
"@base": "https://w3id.org/biolink/vocab/"
}
],
"shapes": [
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/ChemicalFormulaValue",
"datatype": "http://www.w3.org/2001/XMLSchema#string"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/IdentifierType",
"datatype": "http://www.w3.org/2001/XMLSchema#string"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/IriType",
"nodeKind": "iri"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/LabelType",
"datatype": "http://www.w3.org/2001/XMLSchema#string"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/NarrativeText",
"datatype": "http://www.w3.org/2001/XMLSchema#string"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/SymbolType",
"datatype": "http://www.w3.org/2001/XMLSchema#string"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/Frequency",
"datatype": "http://purl.obolibrary.org/obo/UO_0000105"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/PerecentageFrequencyValue",
"datatype": "http://purl.obolibrary.org/obo/UO_0000187"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/Quotient",
"datatype": "http://purl.obolibrary.org/obo/UO_0010006"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/Unit",
"datatype": "http://purl.obolibrary.org/obo/UO_0000000"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/TimeType",
"datatype": "http://www.w3.org/2001/XMLSchema#dateTime"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/vocab/BiologicalSequence",
"datatype": "http://www.w3.org/2001/XMLSchema#string"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/String",
"datatype": "http://www.w3.org/2001/XMLSchema#string"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Integer",
"datatype": "http://www.w3.org/2001/XMLSchema#integer"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Boolean",
"datatype": "http://www.w3.org/2001/XMLSchema#boolean"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Float",
"datatype": "http://www.w3.org/2001/XMLSchema#float"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Double",
"datatype": "http://www.w3.org/2001/XMLSchema#double"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Time",
"datatype": "http://www.w3.org/2001/XMLSchema#dateTime"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Date",
"datatype": "http://www.w3.org/2001/XMLSchema#date"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Datetime",
"datatype": "http://www.w3.org/2001/XMLSchema#dateTime"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Uriorcurie",
"nodeKind": "iri"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Uri",
"nodeKind": "iri"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Ncname",
"datatype": "http://www.w3.org/2001/XMLSchema#string"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Objectidentifier",
"nodeKind": "iri"
},
{
"type": "NodeConstraint",
"id": "https://w3id.org/biolink/biolinkml/type/Nodeidentifier",
"nodeKind": "nonliteral"
},
{
"type": "Shape",
"id": "https://w3id.org/biolink/vocab/ActivityAndBehavior",
"closed": true,
"expression": {
"type": "EachOf",
"expressions": [
{
"type": "EachOf",
"id": "https://w3id.org/biolink/vocab/ActivityAndBehavior_tes",
"expressions": [
"https://w3id.org/biolink/vocab/Occurrent_tes",
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"http://purl.obolibrary.org/obo/BFO_0000003"
]
},
"min": 0
}
]
},
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"https://w3id.org/biolink/vocab/ActivityAndBehavior"
]
},
"min": 1
}
]
}
},
{
"type": "ShapeOr",
"id": "https://w3id.org/biolink/vocab/AdministrativeEntity",
"shapeExprs": [
{
"type": "Shape",
"closed": false,
"expression": {
"type": "EachOf",
"expressions": [
{
"type": "EachOf",
"id": "https://w3id.org/biolink/vocab/AdministrativeEntity_tes",
"expressions": [
"https://w3id.org/biolink/vocab/NamedThing_tes",
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"http://example.org/UNKNOWN/WD/Q35120"
]
},
"min": 0
}
]
},
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"https://w3id.org/biolink/vocab/AdministrativeEntity"
]
},
"min": 1
}
]
}
},
"https://w3id.org/biolink/vocab/Provider"
]
},
{
"type": "ShapeOr",
"id": "https://w3id.org/biolink/vocab/AnatomicalEntity",
"shapeExprs": [
{
"type": "Shape",
"closed": true,
"expression": {
"type": "EachOf",
"expressions": [
{
"type": "EachOf",
"id": "https://w3id.org/biolink/vocab/AnatomicalEntity_tes",
"expressions": [
"https://w3id.org/biolink/vocab/OrganismalEntity_tes",
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"http://example.org/UNKNOWN/WD/Q7239"
]
},
"min": 0
},
"https://w3id.org/biolink/vocab/ThingWithTaxon_tes",
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"https://w3id.org/biolink/vocab/ThingWithTaxon"
]
},
"min": 0
},
{
"type": "TripleConstraint",
"predicate": "http://purl.obolibrary.org/obo/RO_0002292",
"valueExpr": "https://w3id.org/biolink/vocab/GeneOrGeneProduct",
"min": 0,
"max": -1
},
{
"type": "TripleConstraint",
"predicate": "http://purl.obolibrary.org/obo/RO_0002162",
"valueExpr": "https://w3id.org/biolink/vocab/OrganismTaxon",
"min": 0,
"max": -1
}
]
},
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"http://semanticscience.org/resource/SIO_010046"
]
},
"min": 1
}
]
}
},
"https://w3id.org/biolink/vocab/Cell",
"https://w3id.org/biolink/vocab/CellularComponent",
"https://w3id.org/biolink/vocab/GrossAnatomicalStructure"
]
},
{
"type": "ShapeOr",
"id": "https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityAssociation",
"shapeExprs": [
{
"type": "Shape",
"closed": true,
"expression": {
"type": "EachOf",
"expressions": [
{
"type": "EachOf",
"id": "https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityAssociation_tes",
"expressions": [
"https://w3id.org/biolink/vocab/Association_tes",
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"http://purl.org/oban/association"
]
},
"min": 0
},
{
"type": "TripleConstraint",
"predicate": "https://w3id.org/biolink/vocab/subject",
"valueExpr": "https://w3id.org/biolink/vocab/AnatomicalEntity",
"min": 1,
"max": 1
},
{
"type": "TripleConstraint",
"predicate": "https://w3id.org/biolink/vocab/object",
"valueExpr": "https://w3id.org/biolink/vocab/AnatomicalEntity",
"min": 1,
"max": 1
}
]
},
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityAssociation"
]
},
"min": 1
}
]
}
},
"https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityOntogenicAssociation",
"https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityPartOfAssociation"
]
},
{
"type": "Shape",
"id": "https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityOntogenicAssociation",
"closed": true,
"expression": {
"type": "EachOf",
"expressions": [
{
"type": "EachOf",
"id": "https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityOntogenicAssociation_tes",
"expressions": [
"https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityAssociation_tes",
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityAssociation"
]
},
"min": 0
},
{
"type": "TripleConstraint",
"predicate": "https://w3id.org/biolink/vocab/subject",
"valueExpr": "https://w3id.org/biolink/vocab/AnatomicalEntity",
"min": 1,
"max": 1
},
{
"type": "TripleConstraint",
"predicate": "https://w3id.org/biolink/vocab/relation",
"valueExpr": "https://w3id.org/biolink/vocab/IriType",
"min": 1,
"max": 1
},
{
"type": "TripleConstraint",
"predicate": "https://w3id.org/biolink/vocab/object",
"valueExpr": "https://w3id.org/biolink/vocab/AnatomicalEntity",
"min": 1,
"max": 1
}
]
},
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityOntogenicAssociation"
]
},
"min": 1
}
]
}
},
{
"type": "Shape",
"id": "https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityPartOfAssociation",
"closed": true,
"expression": {
"type": "EachOf",
"expressions": [
{
"type": "EachOf",
"id": "https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityPartOfAssociation_tes",
"expressions": [
"https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityAssociation_tes",
{
"type": "TripleConstraint",
"predicate": "http://www.w3.org/1999/02/22-rdf-syntax-ns#type",
"valueExpr": {
"type": "NodeConstraint",
"values": [
"https://w3id.org/biolink/vocab/AnatomicalEntityToAnatomicalEntityAssociation"
]
},
"min": 0
},
{
"type": "TripleConstraint",
"predicate": "https://w3id.org/biolink/vocab/subject",
"valueExpr": "https://w3id.org/biolink/vocab/AnatomicalEntity",
"min": 1,
"max": 1
},
{
"type": "TripleConstraint",
"predicate": "https://w3id.org/biolink/vocab/relation",
"valueExpr": "https://w3id.org/biolink/vocab/IriType",
"min": 1,
"max": 1
},
{
"type": "TripleConstraint",
"predicate": "https://w3id.org/biolink/vocab/object",
"valueExpr": "https://w3id.org/biolink/vocab/AnatomicalEntity",
"min": 1,
"max": 1
}
]
},
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