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DESCRIPTION
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Package: biodbKegg
Title: biodbKegg, a library for connecting to the KEGG Database
Version: 1.3.0
Authors@R: c(person("Pierrick", "Roger", email = "pierrick.roger@cea.fr", role = c("aut", "cre"), comment=c(ORCID="0000-0001-8177-4873")))
Description: The biodbKegg library is an extension of the biodb framework
package that provides access to the KEGG databases Compound, Enzyme, Genes,
Module, Orthology and Reaction. It allows to retrieve entries by their
accession numbers. Web services like "find", "list" and "findExactMass" are
also available. Some functions for navigating along the pathways have also
been implemented.
URL: https://github.com/pkrog/biodbKegg
BugReports: https://github.com/pkrog/biodbKegg/issues
biocViews: Software, Infrastructure, DataImport, Pathways, KEGG
Depends:
R (>= 4.1)
License: AGPL-3
Encoding: UTF-8
VignetteBuilder: knitr
Suggests:
BiocStyle,
roxygen2,
devtools,
testthat (>= 2.0.0),
knitr,
rmarkdown,
igraph,
magick,
lgr
Imports:
R6,
biodb (>= 1.4.2),
chk,
lifecycle
RoxygenNote: 7.2.1
Collate:
'KeggShape.R'
'KeggCircle.R'
'KeggConn.R'
'KeggCompoundConn.R'
'KeggEntry.R'
'KeggCompoundEntry.R'
'KeggEnzymeConn.R'
'KeggEnzymeEntry.R'
'KeggGenesConn.R'
'KeggGenesEntry.R'
'KeggGlycanConn.R'
'KeggGlycanEntry.R'
'KeggModuleConn.R'
'KeggModuleEntry.R'
'KeggOrthologyConn.R'
'KeggOrthologyEntry.R'
'KeggPathwayConn.R'
'KeggPathwayEntry.R'
'KeggReactionConn.R'
'KeggReactionEntry.R'
'KeggRect.R'
'package.R'