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pipeline_genesets assumes that a genome has a miRBase entry #136

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IanSudbery opened this issue Feb 16, 2021 · 1 comment
Open

pipeline_genesets assumes that a genome has a miRBase entry #136

IanSudbery opened this issue Feb 16, 2021 · 1 comment

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@IanSudbery
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Which, obviously, not all genomes do. In particular I am working with the yeast genome, and there is no miRBase. I'm also about to start working on the CHO genome, which doesn't have a mirBase either. Both these have Ensembl and UCSC entries, so it seems sensible that the genesets pipeline should run on them.
@jscaber
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jscaber commented Feb 14, 2022

Did you start fixing this Ian? A simple conditional for the miRBase would be the best solution here?

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@IanSudbery @jscaber