Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Duplication of code between bamstats.py and mappingqc.py #60

Open
jscaber opened this issue Sep 21, 2018 · 2 comments
Open

Duplication of code between bamstats.py and mappingqc.py #60

jscaber opened this issue Sep 21, 2018 · 2 comments

Comments

@jscaber
Copy link
Contributor

jscaber commented Sep 21, 2018

When fixing bamstats.py I noticed almost 100% code overlap between bamstats which is used by bamstats.py and mappingqc.py which is used by pipeline windows, intervals peakcalling etc.
Should probably be merged.
Best wishes, Jakub
@Acribbs
Copy link
Contributor

Acribbs commented Sep 21, 2018

I completely forgot abut this, I think the plan was to modify the code so windows and intervals point to bamstats and remove mappingqc

@jscaber
Copy link
Contributor Author

jscaber commented Feb 14, 2022

See 5f63ab3

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@Acribbs @jscaber