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Figure out what to do with repeated spatial coordinates #1330

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ivirshup opened this issue Jan 13, 2025 · 0 comments
Open

Figure out what to do with repeated spatial coordinates #1330

ivirshup opened this issue Jan 13, 2025 · 0 comments

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@ivirshup
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A couple of the slide-see datasets in cellxgene multiple observations with the same coordinate point. Currently I am blocking these on the spatial build, since tiledbsoma errors when we try to write them. Lattice is reaching out to the submitters to see if this is a processing problem or something to be expected.

Once we hear back from the submitters we will make a schema decision on whether this should be allowed. We can fix the error for repeated coordinates in tiledbsoma with:

allows_duplicates enabled in the PlatformConfig (on create) and sm.check_coord_dups disabled in the TileDB Context (on write).

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