alfa-cohort.yml

# each Collection must have a title
title: Segmentation Plugins by the Alfa Cohort

# the date the collection was last updated. must be in ISO-8601 format
updated_date: "2023-02-02"

# a one-sentence summary of the collection. 
# give napari users insight into what the collection contains and how it will help them.
# this will be shown on the Collection's card.
summary: Plugins for cell segmentation created by some of the first napari plugin developers 


# A longer description of the collection. 
# Give more background and context on the collection, what the plugins do, and why it matters.
# This will be displayed at the top of the collection.
# (See https://yaml-multiline.info/ for more syntax for multiline fields)
description: >
  Plugins for cell segmentation created by participants in the the napari Alfa Cohort, a collaboration between some of the first napari Plugin Developers and Chan Zuckerberg Initiative. 
  More information on this collaboration can be found here: https://chanzuckerberg.github.io/napari-plugin-alfa-cohort/ 

# Provide a cover image for the collection. 
# This must be at least 1400px and be present in the top-level `images` folder in this repo
cover_image: national-cancer-institute-evhLgfOjU5Y-unsplash.jpg

# the list of plugins in this collection
plugins:
    # the name of the plugin is the pypi name
  - name: napari-yapic-prediction
    # provide a comment to let users know why this plugin matters
    comment: Classify every pixel from your own pre-trained deep learning models
  - name: cellfinder-napari
    comment: Quickly detect neurons in whole brain flourescent imaging data
  - name: cellpose-napari
    comment: Segment cells and nuclei leveraging cytoplasm channels
  - name: napari-nucleaizer
    comment: Segment cellular nuclei across a wide range of imaging modalities
  - name: stardist-napari
    comment: Segment nuclei from fluorescent and histopathology images
   
# who created this collection? add your name, credentials, and relevant links
curator:
  name: Justin Kiggins
  title: Product Manager
  affiliation:
    institution: Chan Zuckerberg Initiative
    website: https://chanzuckerberg.com
  links:
    # an ORCID ID is required
    orcid: 0000-0002-4638-7015
    # (optional) link to Twitter
    twitter: https://twitter.com/neuromusic
    # (optional) link to GitHub
    github: https://github.com/neuromusic
    # (optional) link to another website, such as a personal or institutional homepage
    website: https://justinkiggins.com

# the optional "visibility" field lets you set a collection to "hidden" or "disabled", which can be useful for testing purposes
# visibility: hidden