brainglobe.yml

# each Collection must have a title
title: BrainGlobe

# the date the collection was last updated. must be in ISO-8601 format
updated_date: "2022-05-30"

# a one-sentence summary of the collection. 
# give napari users insight into what the collection contains and how it will help them.
# this will be shown on the Collection's card.
summary: BrainGlobe computational neuroanatomy plugins


# A longer description of the collection. 
# Give more background and context on the collection, what the plugins do, and why it matters.
# This will be displayed at the top of the collection.
# (See https://yaml-multiline.info/ for more syntax for multiline fields)
description: >
  Plugins for computational neuroanatomy using the BrainGlobe suite of tools. Amongst other applications, this collection provides a pipeline for the analysis of whole-brain fluorescence microscopy data (e.g. from blockface or lightsheet microscopy).

# Provide a cover image for the collection. 
# This must be at least 1400px and be present in the top-level `images` folder in this repo
cover_image: parvalbumin.jpg

# the list of plugins in this collection
plugins:
    # the name of the plugin is the pypi name
  - name: brainreg-napari
    # provide a comment to let users know why this plugin matters
    comment: Multi-atlas whole-brain microscopy registration
  - name: cellfinder-napari
    comment: Quickly detect neurons in whole brain fluorescence imaging data
  - name: brainreg-segment
    comment: Manual segmentation of 3D brain structures in a common anatomical space
  - name: brainglobe-napari-io
    comment: Read and write files from the BrainGlobe neuroanatomy suite
   
# who created this collection? add your name, credentials, and relevant links
curator:
  name: Adam Tyson
  title: Head Research Engineer
  affiliation:
    institution: Sainsbury Wellcome Centre & Gatsby Computational Neuroscience Unit
    website: https://www.sainsburywellcome.org/
  links:
    # an ORCID ID is required
    orcid:  0000-0003-3225-1130
    # (optional) link to Twitter
    twitter: https://twitter.com/adamltyson
    # (optional) link to GitHub
    github: https://github.com/adamltyson
    # (optional) link to another website, such as a personal or institutional homepage
    website: https://adamltyson.com