New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Alignment with PyOBO export of Rhea #7

Open

cthoyt opened this issue Aug 30, 2022 · 1 comment

cthoyt commented Aug 30, 2022

FYI there's a PyOBO export of Rhea in the OBO format available at https://github.com/biopragmatics/obo-db-ingest/tree/main/export/rhea/122

Collaborator

cmungall commented Mar 30, 2024

Is the alignment you had in mind:

modeling of reactions and reaction participants (plus stoi / rh:coefficient)
how to represent directionality
schema-concept classes in the rhea schema such as rh:SmallMolecule (which CHEBI have been resistant to add), rh:GenericPolypeptide

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment