From 1e961077eec330b600d27ae89f828036ea01c197 Mon Sep 17 00:00:00 2001 From: Brian Alston Date: Wed, 3 Jul 2019 15:18:56 +0100 Subject: [PATCH] R 3.6.0 additionla packages updated to get a working set of Geographic packages (PROJ, GDAL etc). --- R-3.6.0_packages_install | 5 +++-- files/R_UCL/R_packages_UCL_5.R | 9 ++++++++- 2 files changed, 11 insertions(+), 3 deletions(-) diff --git a/R-3.6.0_packages_install b/R-3.6.0_packages_install index 15e968fb..84b8bcce 100755 --- a/R-3.6.0_packages_install +++ b/R-3.6.0_packages_install @@ -23,6 +23,7 @@ # Updated October 2018 to create ~/.R/Makevars to allow installaion of rstan # Updated April 2019 for R 3.5.3 and PROJ.4 6.0.0 # Updated June 2019 for R 3.6.0, Texinfo 6.6 and TeX Live 2019 +# Further updates to get a working set of Geographic packages (PROJ, GDAL etc) July 2019 # # Using Ian's require function to load modules # @@ -64,7 +65,7 @@ require perl/5.22.0 require libtool/2.4.6 require graphicsmagick/1.3.21 require python2/recommended -require proj.4/6.0.0 +require proj.4/6.1.0 require gdal/2.1.4 require gmt/5.4.5 require geos/3.5.0/gnu-4.9.2 @@ -134,7 +135,7 @@ R --no-save < $R_input # No longer on CRAN - Aug 2014 # Removed from packages to be built June 2019 as it fails to build with R 3.6.0 -# R CMD INSTALL -l $RLIB_MAIN ${LOCALDIR}/NetworkAnalysis_0.3-1.tar.gz +# ${LOCALDIR}/NetworkAnalysis_0.3-1.tar.gz R_input=${LOCALDIR}/R_packages_UCL_4.R R --no-save < $R_input diff --git a/files/R_UCL/R_packages_UCL_5.R b/files/R_UCL/R_packages_UCL_5.R index 0b366528..be7db2dd 100644 --- a/files/R_UCL/R_packages_UCL_5.R +++ b/files/R_UCL/R_packages_UCL_5.R @@ -123,10 +123,18 @@ install.packages ("psych", lib=mainLib, repos=repros); install.packages ("rlecuyer", lib=mainLib, repos=repros); +install.packages ("devtools", lib=mainLib, repos=repros); + # More requsts from Political Science +# Install sf from GitHub repository + +sfconf <- '--with-proj-api=yes --with-proj-lib=/shared/ucl/apps/PROJ.4/6.1.0/lib --with-proj-share=/shared/ucl/apps/PROJ.4/6.1.0/share/proj PROJ_CPPFLAGS="${PROJ_CPPFLAGS} -DACCEPT_USE_OF_DEPRECATED_PROJ_API_H -DHAVE_PROJ_H"'; +devtools::install_github("r-spatial/sf", configure.args=sfconf); + install.packages ("rgdal", lib=mainLib, repos=repros); install.packages ("rgeos", lib=mainLib, repos=repros); + install.packages ("erer", lib=mainLib, repos=repros); install.packages ("panelAR", lib=mainLib, repos=repros); install.packages ("arm", lib=mainLib, repos=repros); @@ -159,7 +167,6 @@ install.packages ("png", lib=mainLib, repos=repros); install.packages ("TAM", lib=mainLib, repos=repros); # For Tom O'Grady (t.o'grady@ucl.ac.uk) April 2019 -install.packages ("devtools", lib=mainLib, repos=repros); devtools::install_github("jamesdunham/dgo"); # For Kasia Kozdon (k.kozdon.11@ucl.ac.uk) April 2019