From e471d5c238aeedb516ba88b23648b02e45327843 Mon Sep 17 00:00:00 2001
From: ivansg44 <ivan_gill@sfu.ca>
Date: Thu, 27 Jun 2024 11:17:00 -0700
Subject: [PATCH] Parse n/a fn vals in gvf (#213)

---
 data_parser.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/data_parser.py b/data_parser.py
index 0af8797..df9eac1 100644
--- a/data_parser.py
+++ b/data_parser.py
@@ -164,7 +164,7 @@ def parse_gvf_sample_variants(path):
 
             fn_dict = mutation_dict["functions"]
             fn_category = attrs["function_category"].strip('"')
-            if not fn_category:
+            if not fn_category or fn_category == "n/a":
                 continue
             if fn_category not in fn_dict:
                 fn_dict[fn_category] = {}