diff --git a/modules/local/convertgff2json.nf b/modules/local/convertgff2json.nf index 4dfa2a3..9f318f7 100644 --- a/modules/local/convertgff2json.nf +++ b/modules/local/convertgff2json.nf @@ -8,7 +8,7 @@ process CONVERTGFFTOJSON { conda "conda-forge::pandas=1.4.3" container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3' - : 'amancevice/pandas:1.4.3'}" + : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}" input: tuple val(meta), path(gff) diff --git a/modules/local/extractMetadata.nf b/modules/local/extractMetadata.nf index f892978..005c9de 100644 --- a/modules/local/extractMetadata.nf +++ b/modules/local/extractMetadata.nf @@ -3,7 +3,7 @@ process EXTRACTMETADATA { conda "conda-forge::pandas=1.4.3" container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3' - : 'amancevice/pandas:1.4.3'}" + : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}" input: tuple val(meta), path(metadata) diff --git a/modules/local/extractVariants.nf b/modules/local/extractVariants.nf index 238c302..b861c55 100644 --- a/modules/local/extractVariants.nf +++ b/modules/local/extractVariants.nf @@ -3,7 +3,7 @@ process EXTRACTVARIANTS { conda "conda-forge::pandas=1.4.3" container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3' - : 'amancevice/pandas:1.4.3'}" + : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}" input: tuple val(meta), path(variants) diff --git a/modules/local/harmonize_metadata.nf b/modules/local/harmonize_metadata.nf index 7612a18..e5f4cbd 100644 --- a/modules/local/harmonize_metadata.nf +++ b/modules/local/harmonize_metadata.nf @@ -3,8 +3,8 @@ process METADATA_HARMONIZER { conda "conda-forge::pandas=1.4.3" container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container - ? 'docker://pandas/pandas:pip-all' - : 'pandas/pandas:pip-all'}" + ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3' + : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}" input: tuple val(meta), path(metadata) diff --git a/modules/local/merge_classification_report.nf b/modules/local/merge_classification_report.nf index b40a270..f9a6fb6 100644 --- a/modules/local/merge_classification_report.nf +++ b/modules/local/merge_classification_report.nf @@ -3,7 +3,7 @@ process MERGE_CLASSIFFICATION_METADATA { conda "conda-forge::pandas=1.4.3" container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3' - : 'amancevice/pandas:1.4.3'}" + : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}" input: tuple val(meta), path(metadata) diff --git a/modules/local/splitmutations_gvf.nf b/modules/local/splitmutations_gvf.nf index 3d6c6c2..5bcf46e 100644 --- a/modules/local/splitmutations_gvf.nf +++ b/modules/local/splitmutations_gvf.nf @@ -5,7 +5,7 @@ process NCOVSPLITMUTATIONSGVF { conda "conda-forge::pandas=1.4.3" container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3' - : 'amancevice/pandas:1.4.3'}" + : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}" input: tuple val(meta), path(gvf) diff --git a/modules/local/splitmutations_pokay.nf b/modules/local/splitmutations_pokay.nf index 07f4cdd..7396183 100644 --- a/modules/local/splitmutations_pokay.nf +++ b/modules/local/splitmutations_pokay.nf @@ -5,7 +5,7 @@ process NCOVSPLITMUTATIONSPOKAY { conda "conda-forge::pandas=1.4.3" container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3' - : 'amancevice/pandas:1.4.3'}" + : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}" input: tuple val(meta), path(annotations) diff --git a/modules/local/vcftogvf.nf b/modules/local/vcftogvf.nf index 4b8d25e..9881995 100644 --- a/modules/local/vcftogvf.nf +++ b/modules/local/vcftogvf.nf @@ -3,7 +3,7 @@ process VCFTOGVF { conda "conda-forge::pandas=1.4.3" container "${workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? 'https://depot.galaxyproject.org/singularity/pandas:1.4.3' - : 'amancevice/pandas:1.4.3'}" + : 'community.wave.seqera.io/library/pip_pandas:f80b46869e03f6ef'}" input: tuple val(meta), path(vcf)