pom.xml

<?xml version="1.0" encoding="UTF-8"?>

<!--
 *
 * See the NOTICE file distributed with this work for additional
 * information regarding copyright ownership.
 *
 * This is free software; you can redistribute it and/or modify it
 * under the terms of the GNU Lesser General Public License as
 * published by the Free Software Foundation; either version 2.1 of
 * the License, or (at your option) any later version.
 *
 * This software is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 * Lesser General Public License for more details.
 *
 * You should have received a copy of the GNU Lesser General Public
 * License along with this software; if not, write to the Free
 * Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA
 * 02110-1301 USA, or see the FSF site: http://www.fsf.org.
 *
-->

<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/maven-v4_0_0.xsd">
  <modelVersion>4.0.0</modelVersion>
  <groupId>savant</groupId>
  <artifactId>annotation-formatter</artifactId>
  <version>1.0-SNAPSHOT</version>
  <dependencies>
    <dependency>
      <groupId>commons-logging</groupId>
      <artifactId>commons-logging</artifactId>
      <version>1.1.1</version>
    </dependency>
    <dependency>
      <groupId>org.apache.commons</groupId>
      <artifactId>commons-lang3</artifactId>
      <version>3.1</version>
    </dependency>
    <dependency>
      <groupId>org.apache.commons</groupId>
      <artifactId>commons-compress</artifactId>
      <version>1.5</version>
    </dependency>
    <dependency>
      <groupId>commons-io</groupId>
      <artifactId>commons-io</artifactId>
      <version>2.4</version>
    </dependency>
    <dependency>
      <groupId>net.sf.picard</groupId>
      <artifactId>sam-jdk</artifactId>
      <version>1.61</version>
    </dependency>
    <dependency>
      <groupId>org.xerial</groupId>
      <artifactId>sqlite-jdbc</artifactId>
      <version>3.7.2</version>
    </dependency>
  </dependencies>
  <build>
    <plugins>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-jar-plugin</artifactId>
        <configuration>
          <archive>
            <manifest>
              <addClasspath>true</addClasspath>
              <classpathLayoutType>custom</classpathLayoutType>
              <customClasspathLayout>dependency/$${artifact.artifactId}-$${artifact.version}$${dashClassifier?}.$${artifact.extension}</customClasspathLayout>
              <mainClass>org.ut.medsavant.annotation.format.AnnotationFormatter</mainClass>
            </manifest>
          </archive>
        </configuration>
      </plugin>
      <plugin>
        <groupId>org.apache.maven.plugins</groupId>
        <artifactId>maven-dependency-plugin</artifactId>
        <executions>
          <execution>
            <goals>
              <goal>copy-dependencies</goal>
            </goals>
          </execution>
        </executions>
      </plugin>
    </plugins>
  </build>

  <repositories>
    <repository>
      <id>uoft-externals</id>
      <name>UofT external repositories mirror</name>
      <url>http://nexus.cs.toronto.edu/nexus/content/groups/public/</url>
      <releases>
        <enabled>true</enabled>
      </releases>
      <snapshots>
        <enabled>false</enabled>
      </snapshots>
    </repository>
  </repositories>
  <pluginRepositories>
    <pluginRepository>
      <id>uoft-externals</id>
      <name>UofT external repositories mirror</name>
      <url>http://nexus.cs.toronto.edu/nexus/content/groups/public/</url>
      <releases>
        <enabled>true</enabled>
      </releases>
      <snapshots>
        <enabled>false</enabled>
      </snapshots>
    </pluginRepository>
  </pluginRepositories>
</project>