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Merge branch 'release/4.6.0'
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‎.github/workflows/ci.yml‎

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name: Continuous Integration process
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run-name: ${{ github.actor }} has launched CI process on ${{ github.ref_name }}
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on:
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push:
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branches:
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- "main"
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- "develop"
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pull_request:
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branches:
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- "main"
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- "develop"
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workflow_dispatch:
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permissions:
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contents: read
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issues: read
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checks: write
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pull-requests: write
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jobs:
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Continuous-Integration-Actions:
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runs-on: self-hosted
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env:
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PACKAGE_TOKEN: ${{ secrets.JLS_TOKEN }}
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steps:
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- name: Checkout sources
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id: ci-sources-checkout
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Set up JDK 21
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id: ci-java-setup
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uses: actions/setup-java@v4
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with:
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java-version: 21
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distribution: 'temurin'
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- name: Cache Gradle
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uses: actions/cache@v4
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with:
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path: |
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~/.gradle/caches
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~/.gradle/wrapper
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key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle*', '**/gradle-wrapper.properties', '**/gradle.properties') }}
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restore-keys: |
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${{ runner.os }}-gradle-
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- name: Gradle build
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id: ci-gradle-build
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run: ./gradlew clean assemble
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- name: Gradle tests
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run: ./gradlew test
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- name: Generate JaCoCo Coverage Report
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run: ./gradlew jacocoTestReport
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- name: Add coverage to PR
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id: jacoco
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uses: madrapps/jacoco-report@v1.7.0
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with:
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paths: |
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**/build/reports/jacoco/test/jacocoTestReport.xml
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token: ${{ secrets.GITHUB_TOKEN }}
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min-coverage-overall: 40
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min-coverage-changed-files: 60
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update-comment: true
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- name: Display Coverage info
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run: |
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echo "Total coverage ${{ steps.jacoco.outputs.coverage-overall }}"
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echo "Changed Files coverage ${{ steps.jacoco.outputs.coverage-changed-files }}"
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- name: Publish Test Results
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uses: EnricoMi/publish-unit-test-result-action/linux@v2
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if: always()
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with:
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files: |
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build/test-results/**/*.xml
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- name: Archive test artifacts
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if: failure()
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uses: actions/upload-artifact@v4
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with:
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name: Package
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path: |
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**/build/reports/
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**/build/test-results/
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- name: Final Step
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id: ci-final-step
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run: |
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echo "This job's status is ${{ job.status }}."
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echo "Created jar file(s):"
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find ./build -name '*.jar'

‎.github/workflows/release-github.yml‎

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name: Publish GitHub Release
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on:
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workflow_dispatch:
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inputs:
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ref:
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description: 'Tag to run workflow on'
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required: true
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push:
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tags:
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- "v*.*.*"
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jobs:
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release:
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runs-on: ubuntu-latest
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permissions:
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contents: write
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steps:
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- name: Checkout code
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uses: actions/checkout@v4
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with:
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ref: ${{ github.event.inputs.ref || github.ref_name }}
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- name: Set up JDK 11
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uses: actions/setup-java@v4
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with:
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distribution: 'temurin'
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java-version: '11'
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cache: 'gradle'
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- name: Cache Gradle
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uses: actions/cache@v4
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with:
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path: ~/.gradle/caches
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key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle*', '**/gradle-wrapper.properties') }}
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restore-keys: |
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${{ runner.os }}-gradle-
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- name: Build project
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run: ./gradlew build
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- name: Extract Changelog for Release
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id: changelog
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run: |
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TAG_NAME="${GITHUB_REF##*/}"
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VERSION="${TAG_NAME#v}"
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sed -n "/## Version $VERSION/,/## Version/p" CHANGELOG.md | sed '1d;$d' | awk 'NF || p {print} {p = NF}' > release_notes.md
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env:
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GITHUB_REF: ${{ github.ref }}
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- name: Create GitHub Release
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id: create_release
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uses: ncipollo/release-action@v1
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with:
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artifacts: "build/libs/*.jar"
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bodyFile: "release_notes.md"
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tag: ${{ github.ref_name }}
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name: "Release ${{ github.ref_name }}"
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draft: true

‎.github/workflows/release-maven-central.yml‎

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name: Publish Maven Central
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on:
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push:
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tags:
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- "v*.*.*"
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workflow_dispatch:
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jobs:
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release:
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runs-on: ubuntu-latest
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steps:
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- name: Checkout code
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uses: actions/checkout@v4
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- name: Set up JDK 11
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uses: actions/setup-java@v4
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with:
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distribution: 'temurin'
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java-version: '11'
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cache: 'gradle'
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- name: Cache Gradle
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uses: actions/cache@v4
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with:
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path: ~/.gradle/caches
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key: ${{ runner.os }}-gradle-${{ hashFiles('**/*.gradle*', '**/gradle-wrapper.properties') }}
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restore-keys: |
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${{ runner.os }}-gradle-
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- name: Build and publish to Sonatype (staging only)
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env:
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OSSRH_USERNAME: ${{ secrets.OSSRH_USERNAME }}
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OSSRH_PASSWORD: ${{ secrets.OSSRH_PASSWORD }}
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GPG_SIGNING_KEY: ${{ secrets.GPG_SIGNING_KEY }}
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GPG_SIGNING_PASSPHRASE: ${{ secrets.GPG_SIGNING_PASSPHRASE }}
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run: ./gradlew publishToSonatype
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- name: Manual Release Reminder
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run: echo "The artifacts have been staged on Sonatype. Please log in to Sonatype Nexus to close and release the staging repository manually."

‎.github/workflows/sphinx-prod.yml‎

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name: "Sphinx: Render production docs"
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run-name: ${{ github.actor }} has launched CI process on ${{ github.ref_name }}
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on:
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push:
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branches:
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- "main"
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workflow_dispatch:
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permissions:
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contents: write
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jobs:
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Continuous-Integration-Actions:
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runs-on: self-hosted
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env:
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PACKAGE_TOKEN: ${{ secrets.JLS_TOKEN }}
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steps:
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- name: Checkout repository
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uses: actions/checkout@v4
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with:
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ref: main
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- name: Check existing tags before fetch
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run: git tag --sort=-v:refname || echo "No tags found"
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- name: Delete all local tags to avoid conflicts
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run: git tag -d $(git tag) || echo "No tags to delete"
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- name: Fetch updated tags
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run: git fetch --prune --tags --force
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- name: Check tags after fetch
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run: git tag --sort=-v:refname || echo "No tags found after fetch"
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- name: Build Sphinx documentation with multiversion
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run: |
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set -x # Enable debug mode
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source /builds/miniconda3/etc/profile.d/conda.sh
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conda activate corese-core-documentation
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sphinx-multiversion docs/source build/html -D exhale_args.containmentFolder="\${sourcedir}/java_api"
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chmod +x docs/switcher_generator.sh
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./docs/switcher_generator.sh build/html/switcher.json build/html/index.html
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set +x # Disable debug mode
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- name: Deploy to GitHub Pages
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uses: peaceiris/actions-gh-pages@v3
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with:
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github_token: ${{ secrets.GITHUB_TOKEN }}
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publish_dir: ./build/html
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keep_files: true

‎.gitignore‎

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# Other build directories and generated files
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/bin/
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/qodana.yaml

‎CHANGELOG.md‎

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<!-- markdownlint-disable MD024 -->
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# Corese Changelog
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## Version 4.6.0 – 2025-04-11
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### Added
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- Added script installers for Linux, macOS, and Windows platforms.
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- Added verbose query visualization in `query-remote` command.
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- Added deployment of the documentation site at [corese-stack.github.io/corese-command](https://corese-stack.github.io/corese-command).
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- Added new `canonicalize` command to canonicalize RDF files in formats like `rdfc-1.0`.
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### Changed
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- Renamed commands for consistency:
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- `sparql` → `query`
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- `shacl` → `validate`
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- `remote-sparql` → `query-remote`
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- Updated completion candidate colors from pale pink to magenta for better visibility on white backgrounds.
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- Updated Corese-Core dependency to version `4.6.3`.
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- Changed `--no-owl-import` to `--owl-import` across all commands for clarity.
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- The option now explicitly enables `owl:imports` (default is `false`).
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### Fixed
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- Fixed Windows bug related to incorrect line endings.
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- Fixed issue with missing `.` when automatically adding file extensions on export.
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- Fixed JSON-LD serializer bug on Windows.
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### Removed
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- Removed redirection options from the `query-remote` command.
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## Version 4.5.0 – 2023-12-14
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### Added
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- Added new sub-command `shacl` to validate RDF graphs against SHACL shapes.
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- Added new sub-command `remote-sparql` to execute SPARQL queries on remote endpoints (see [issue #135](https://github.com/Wimmics/corese/issues/135)).
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- Added verbose option.
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- Added support for property files.
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- Added `-no-owl-import` option (see [issue #134](https://github.com/Wimmics/corese/issues/134)).
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- Added output formats `N-Triples` and `N-Quads` to the `convert` sub-command.
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### Changed
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- Moved hint messages to the standard error stream.
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- Moved error messages to the standard error stream (see [issues #141](https://github.com/Wimmics/corese/issues/141) and [#142](https://github.com/Wimmics/corese/issues/142)).
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### Fixed
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- Fixed Trig serialization to escape special characters (see [issue #151](https://github.com/Wimmics/corese/issues/151)).
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- Fixed federated queries with `PREFIX` statements failing under certain conditions (see [issue #140](https://github.com/Wimmics/corese/issues/140)).
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## Version 4.4.1 – 2023-07-25
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### Added
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- Added URL support as an input file for `convert` and `sparql` sub-commands.
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- Added standard input support as an input file for `sparql` and `convert` sub-commands.
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- Added standard output support as an output file for `sparql` and `convert` sub-commands.
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- Added multiple files support as input for the `sparql` sub-command.
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- Added directory and recursive directory support as input for the `sparql` sub-command.
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- Added support for all types of queries (SELECT, CONSTRUCT, ASK, DESCRIBE, INSERT, DELETE, INSERT WHERE, DELETE WHERE) in the `sparql` sub-command.
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- Added user choice for result format in the `sparql` sub-command.
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- Added Markdown output format for the `sparql` sub-command.
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- Added MIME type support as a format name.
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- Added configuration to disable `owl:imports` auto-import.
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### Changed
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- Refactored `convert` and `sparql` sub-commands.
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- Renamed format names for more consistency.
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### Removed
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- Removed `owlProfile` and `ldscript` sub-commands (to be reintroduced in a future release after refactoring).
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### Fixed
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- Fixed warning: `sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.`
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### Security
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- Updated `json` from `20180813` to `20230227` in `/sparql` (see [Pull Request #123](https://github.com/Wimmics/corese/pull/123)).
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- Updated `json` from `20180813` to `20230227` in `/corese-test` (see [Pull Request #124](https://github.com/Wimmics/corese/pull/124)).
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- Updated `guava` from `31.1-jre` to `32.0.0-jre` in `/corese-jena` (see [Pull Request #128](https://github.com/Wimmics/corese/pull/128)).
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## Version 4.4.0 – 2023-03-30
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### Added
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- **Corese-Command**: Initial beta release of the Corese-Command line application.
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> **Note**: The interface and commands are subject to change in future versions.
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- **Options**:
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- `-h`, `--help`: Display help message and exit.
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- `-V`, `--version`: Print version information and exit.
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- **Commands**:
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- `convert`: Allows conversion of RDF files between different serialization formats (e.g., Turtle, RDF/XML, JSON-LD).
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- `sparql`: Enables execution of SPARQL queries directly from the command line.
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- `owlProfile`: Checks RDF data against OWL profiles to ensure compatibility.

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