Unable to parse a HGVS variant in format that VEP accepts

[jimhavrilla]

pyhgvs.InvalidHGVSName: Invalid HGVS cDNA allele "3252delC+3263insC"

VEP's web interface was able to translate that just fine, so I'm assuming that is the correct HGVS format. I gave it the variant as such:

ENST00000333535:c.3252delC+3263insC

a format which worked for all of my other variants. Just a PSA unless there is some older/newer format version for this kind of variant of which I am unaware.

[qins]

I think the format is not standard.

http://varnomen.hgvs.org/recommendations/DNA/variant/indel/

[jimhavrilla]

Ok well I can try and find a way to translate it differently I guess

On Wed, Mar 22, 2017 at 7:42 PM qins ***@***.***> wrote: I think the format is not standard. http://varnomen.hgvs.org/recommendations/DNA/variant/indel/ — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub <#35 (comment)>, or mute the thread <https://github.com/notifications/unsubscribe-auth/AGQ8BAuPFRPZWE7uzCMF8_dlI-oWXwj4ks5roc33gaJpZM4Mlz7Y> .

-- Jim Havrilla PhD Candidate in Human Genetics, University of Utah Accelerated BS/MS in Biomedical Engineering, Drexel University '12, Concentration: Bioinformatics *"Memory, comprehension, communication, motivation"*