use isort (#1198)

Author: Remi-Gau

.pre-commit-config.yaml

@@ -49,6 +49,12 @@ repos:
   - id: rst-backticks
   - id: rst-inline-touching-normal
 
+- repo: https://github.com/pycqa/isort
+  rev: 5.13.2
+  hooks:
+  - id: isort
+    args: [--profile, black]
+
 - repo: https://github.com/psf/black
   rev: 24.1.1
   hooks:
@@ -72,12 +78,6 @@ repos:
   hooks:
   - id: flynt
 
-- repo: https://github.com/asottile/reorder-python-imports
-  rev: v3.12.0
-  hooks:
-  - id: reorder-python-imports
-    args: [--py38-plus, --add-import, from __future__ import annotations]
-
 - repo: https://github.com/pre-commit/mirrors-mypy
   rev: v1.8.0
   hooks:

demos/convert.py

@@ -1,4 +1,5 @@
 """Convert Octave notebooks to scripts."""
+
 from __future__ import annotations
 
 import json

src/bidspm.py

@@ -9,8 +9,7 @@
 from rich import print
 
 from src.matlab import matlab
-from src.parsers import bidspm_log
-from src.parsers import common_parser
+from src.parsers import bidspm_log, common_parser
 
 log = bidspm_log(name="bidspm")
 

src/validate.py

@@ -7,8 +7,7 @@
 import pydantic
 from bsmschema.models import BIDSStatsModel
 
-from src.parsers import bidspm_log
-from src.parsers import validate_parser
+from src.parsers import bidspm_log, validate_parser
 
 log = bidspm_log(name="bidspm")
 

tests/test_bidspm.py

@@ -5,11 +5,13 @@
 
 import pytest
 
-from src.bidspm import append_base_arguments
-from src.bidspm import append_common_arguments
-from src.bidspm import base_cmd
-from src.bidspm import bidspm
-from src.bidspm import run_command
+from src.bidspm import (
+    append_base_arguments,
+    append_common_arguments,
+    base_cmd,
+    bidspm,
+    run_command,
+)
 from src.parsers import common_parser