Visualizing results with iSEE

The output file of the workflow (output/outputR/shiny_sce.rds) can be directly used as input to the iSEE package in order to generate a shiny application where the results can be viewed. After installing iSEE, the following code will start a shiny application where you can browse the results:

library(iSEE)

sce <- readRDS("example_data/output/outputR/shiny_sce.rds")

# sce on gene level
sce_g <- sce$sce_gene

# sce on transcript level
sce_t <- sce$sce_tx

# for example to see results on gene level
app <- iSEE(sce_g)
shiny::runApp(app)