From cab89fb3425182cd39bf9ae087fda7ba0b74b516 Mon Sep 17 00:00:00 2001
From: Jon-Fredrik Nielsen <jfnielsen@gmail.com>
Date: Fri, 20 Oct 2023 14:14:48 -0400
Subject: [PATCH] Offset time vector by 12us (time to start segment) On branch
 develop 	modified:   plotseq.m

---
 +toppe/plotseq.m | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/+toppe/plotseq.m b/+toppe/plotseq.m
index c5676a8..16bcac1 100644
--- a/+toppe/plotseq.m
+++ b/+toppe/plotseq.m
@@ -54,6 +54,7 @@
 arg.gmax            = [];  % Gauss/cm
 arg.rhomax          = [];  % Gauss
 arg.printTime       = false;
+arg.segmentStart    = 12;    % earliest start time for gradient events inside segment
 
 arg = toppe.utils.vararg_pair(arg, varargin);
 
@@ -145,7 +146,7 @@
 
     % find blocks containing start and stop times
     n = 1;
-    t = 0;  % time counter (us)
+    t = 0;  % time counter (us). Earliest start time is 16us.
     dur = [];
     while t <= tic 
         if n == size(loop,1)-1
@@ -215,6 +216,9 @@
 
 rf = rho.*exp(1i*th);
 
+%% Add segment start time for plotting
+T = T + arg.segmentStart;
+
 %% plot
 if arg.doDisplay
     T = T*1e-3;  % ms