This is a repository for group 7 project

Reproducibility Instructions

Hydrology project https://github.com/cyber-carpentry/group7_repo/blob/master/hydrology/README.md
Machine learning project https://github.com/cyber-carpentry/group7_repo/blob/master/machine_learning/README.md

1. Group members

Chen -MIT
Jay -Cleveland Clinic
An -LSU

2. Goals by members

Reproduce Sadler et al. (2018) workflow
Practice container, singularity, and snakemake
Machine learning
Run singularity on cloudv

3. Materials

Sadler et al. 2018 paper preprint - http://faculty.virginia.edu/goodall/Sadler_JHE_2018_Preprint.pdf
Sadler et al. 2018 paper GitHub repository - https://github.com/uva-hydroinformatics/flood_data
Sadler et al. 2018 paper Hydroshare repository - https://www.hydroshare.org/resource/9db60cf6c8394a0fa24777c8b9363a9b/
Other materials https://drive.google.com/drive/folders/1T4bUQztoRkm5S6P6fnpC-a5FttteE-jz

4. Deliverables

dockerfile with all required environment to run the hydrology project workflow
the workflow include 3 preporocessing python scripts and 1 R script

5. Hydrology project phases

project preparation: read paper, make plan, gather script and data
fix bugs for each script, including 3 preprocssing scripts, 1 model script
run multiple scripts pipeline using workflow
containerize the workflow