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@book{vittinghoff2e,
title={Regression methods in biostatistics: linear, logistic, survival, and repeated measures models},
author={Vittinghoff, Eric and Glidden, David V and Shiboski, Stephen C and McCulloch, Charles E},
year={2012},
edition={2},
publisher={Springer},
url={https://doi.org/10.1007/978-1-4614-1353-0}
}
@book{klein2003survival,
title={Survival analysis: techniques for censored and truncated data},
author={Klein, John P and Moeschberger, Melvin L},
volume={1230},
year={2003},
publisher={Springer},
url={https://link.springer.com/book/10.1007/b97377}
}
@book{r4epi,
title={R for Epidemiology},
author={Cannell, Brad and Livingston, Melvin},
year={2024},
publisher={Online},
url={https://www.r4epi.com/}
}
@book{practicalr4epi,
title={Practical R for Epidemiologists},
author={Myatt, Mark},
year={2022},
publisher={Online},
url={https://practical-r.org/index.html}
}
@book{appliedepiusingR,
title={Applied Epidemiology Using R},
author={Aragon, Tomas J.},
year={2013},
publisher={Online},
url={https://tbrieder.org/epidata/course_reading/e_aragon.pdf}
}
@book{phdswR,
title={Population Health Data Science with R},
subtitle={Transforming data into actionable knowledge},
author={Aragon, Tomas J.},
year={2017},
publisher={Online},
url={https://bookdown.org/medepi/phds/}
}
@book{epirhb,
title={The Epidemiologist R Handbook},
editor={Batra, Neale},
year={2024},
publisher={Online},
url={https://www.epirhandbook.com/}
}
@book{dobson4e,
title={An introduction to generalized linear models},
author={Dobson, Annette J and Barnett, Adrian G},
year={2018},
edition={4},
publisher={CRC press},
url={https://doi.org/10.1201/9781315182780}
}
@book{mclachlan2007em,
title={The EM algorithm and extensions},
author={McLachlan, Geoffrey J and Krishnan, Thriyambakam},
year={2007},
edition={2},
publisher={John Wiley \& Sons},
url={https://doi.org/10.1002/9780470191613}
}
@book{CaseBerg01,
author = {Casella, George and Berger, Roger},
isbn = {0534243126},
edition={2},
keywords = {methodology probability statistics},
publisher = {Cengage Learning},
title = {Statistical Inference},
year = 2002,
url={https://www.cengage.com/c/statistical-inference-2e-casella-berger/9780534243128/}
}
@article{grambsch1994proportional,
title={Proportional hazards tests and diagnostics based on weighted residuals},
author={Grambsch, Patricia M and Therneau, Terry M},
journal={Biometrika},
volume={81},
number={3},
pages={515--526},
year={1994},
publisher={Oxford University Press},
url={https://doi.org/10.1093/biomet/81.3.515}
}
@book{fieller2018basics,
title={Basics of Matrix Algebra for Statistics with R},
author={Fieller, Nick},
year={2016},
publisher={Chapman and Hall/CRC},
doi={10.1201/9781315370200},
url={https://doi.org/10.1201/9781315370200}
}
@book{van2018flexible,
title={Flexible imputation of missing data},
author={Van Buuren, Stef},
year={2018},
publisher={CRC press},
url={https://stefvanbuuren.name/fimd/}
}
@article{pohl2021estimands,
author = {Pohl, Moritz and Baumann, Lukas and Behnisch, Rouven and Kirchner, Marietta and Krisam, Johannes and Sander, Anja},
title = {{Estimands—A Basic Element for Clinical Trials}},
journal={Deutsches {\"A}rzteblatt International},
volume = {118},
number = {51-52},
pages = {883-888},
doi = {10.3238/arztebl.m2021.0373},
year = {2021},
URL = {https://www.aerzteblatt.de/int/article.asp?id=222631},
eprint = {https://www.aerzteblatt.de/pdf.asp?id=222631}
}
@article{lawrance2020estimand,
title={What is an estimand, and how does it relate to quantifying the effect of treatment on patient-reported quality of life outcomes in clinical trials?},
author={Lawrance, Rachael and Degtyarev, Evgeny and Griffiths, Philip and Trask, Peter and Lau, Helen and D’Alessio, Denise and Griebsch, Ingolf and Wallenstein, Gudrun and Cocks, Kim and Rufibach, Kaspar},
journal={Journal of Patient-Reported Outcomes},
volume={4},
number={1},
pages={1--8},
year={2020},
publisher={Springer},
url={https://link.springer.com/article/10.1186/s41687-020-00218-5}
}
@article{efron1978assessing,
title={Assessing the accuracy of the maximum likelihood estimator: Observed versus expected Fisher information},
author={Efron, Bradley and Hinkley, David V},
journal={Biometrika},
volume={65},
number={3},
pages={457--483},
year={1978},
publisher={Oxford University Press}
}
@article{canchola2003cox,
title={Cox regression using different time-scales},
author={Canchola, Alison J and Stewart, Susan L and Bernstein, Leslie and West, Dee W and Ross, Ronald K and Deapen, Dennis and Pinder, Richard and Reynolds, Peggy and Wright, William and Anton-Culver, Hoda and others},
journal={Western Users of SAS Software},
location={San Francisco, California},
year={2003},
publisher={Citeseer},
url={https://www.lexjansen.com/wuss/2003/DataAnalysis/i-cox_time_scales.pdf}
}
@book{dunn2018generalized,
title={Generalized linear models with examples in R},
author={Dunn, Peter K and Smyth, Gordon K},
volume={53},
year={2018},
publisher={Springer},
url={https://link.springer.com/book/10.1007/978-1-4419-0118-7}
}
@book{rpkgs,
title={R Packages},
author={Wickham, Hadley and Bryan, Jennifer},
year={2023},
publisher={O'Reilly Media, Inc.},
url={https://r-pkgs.org/}
}
@book{moore2016applied,
title={Applied survival analysis using R},
author={Moore, Dirk F},
volume={473},
year={2016},
publisher={Springer},
doi={10.1007/978-3-319-31245-3},
url={https://link.springer.com/book/10.1007/978-3-319-31245-3}
}
@book{kutner2005applied,
title={Applied linear statistical models},
author={Kutner, Michael H and Nachtsheim, Christopher J and Neter, John and Li, William},
year={2005},
publisher={McGraw-Hill}
}
@book{chatterjee2015regression,
title={Regression analysis by example},
author={Chatterjee, Samprit and Hadi, Ali S},
year={2015},
publisher={John Wiley \& Sons},
url={https://www.wiley.com/en-us/Regression+Analysis+by+Example%2C+4th+Edition-p-9780470055458}
}
@book{seber2012linear,
title={Linear regression analysis},
author={Seber, George AF and Lee, Alan J},
year={2012},
edition={2},
publisher={John Wiley \& Sons},
url={https://www.wiley.com/en-us/Linear+Regression+Analysis%2C+2nd+Edition-p-9781118274422}
}
@book{kleinbaum2014applied,
title={Applied Regression Analysis and other Multivariable Methods},
author={Kleinbaum, David G and Kupper, Lawrence L and Nizam, Azhar and Muller, K and Rosenberg, ES},
year={2014},
edition={5},
publisher={Cengage Learning},
url={https://www.cengage.com/c/applied-regression-analysis-and-other-multivariable-methods-5e-kleinbaum/9781285051086/}
}
@book{kleinbaum2012survival,
title={Survival Analysis: A Self-Learning Text},
author={Kleinbaum, David G and Klein, Mitchel},
year={2012},
edition={3},
publisher={Springer},
url={https://link.springer.com/book/10.1007/978-1-4419-6646-9}
}
@book{kleinbaum2010logistic,
title={Logistic Regression: A Self-Learning Text},
author={Kleinbaum, David G and Klein, Mitchel},
year={2010},
publisher={Springer},
edition={3},
url = {https://link.springer.com/book/10.1007/978-1-4419-1742-3}
}
@book{draper2014applied,
title={Applied regression analysis},
author={Draper, Norman R and Smith, Harry},
year={2014},
edition={3},
publisher={John Wiley \& Sons},
url={https://www.wiley.com/en-us/Applied+Regression+Analysis%2C+3rd+Edition-p-9781118625682}
}
@Manual{venablescodingMatrices,
title = {codingMatrices: Alternative Factor Coding Matrices for Linear Model Formulae},
author = {Bill Venables},
year = {2023},
version = {0.4.0},
note = {R package version 0.4.0},
url = {https://CRAN.R-project.org/package=codingMatrices},
}
@article{anderson1935irises,
title={The irises of the Gaspe Peninsula},
author={Anderson, Edgar},
journal={Bulletin of American Iris Society},
volume={59},
pages={2--5},
year={1935}
}
@book{r4ds,
title={R for Data Science},
author={Wickham, Hadley and {\c{C}}etinkaya-Rundel, Mine and Grolemund, Garrett},
year={2023},
publisher={" O'Reilly Media, Inc."},
url={https://r4ds.hadley.nz/}
}
@book{wickham2019advanced,
title={Advanced R},
author={Wickham, Hadley},
year={2019},
publisher={Chapman and Hall/CRC},
url={https://adv-r.hadley.nz/index.html}
}
@book{changRgraphicscookbook,
title={R graphics cookbook: practical recipes for visualizing data},
author={Chang, Winston},
year={2024},
publisher={O'Reilly Media},
url={https://r-graphics.org/}
}
@Article{welcometidyverse,
title = {Welcome to the {tidyverse}},
author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
year = {2019},
journal = {Journal of Open Source Software},
volume = {4},
number = {43},
pages = {1686},
doi = {10.21105/joss.01686},
}
@book{masteringshiny,
title={Mastering shiny},
author={Wickham, Hadley},
year={2021},
publisher={" O'Reilly Media, Inc."},
url={https://mastering-shiny.org/}
}
@book{golembook,
title={Engineering Production-Grade Shiny Apps},
author={Fay, Colin and Rochette, S{\'e}bastien and Guyader, Vincent and Girard, Cervan},
year={2021},
publisher={Chapman and Hall/CRC},
url={https://engineering-shiny.org/}
}
@book{spatialds,
author = {Edzer Pebesma and Roger Bivand},
year = 2023,
title = {Spatial Data Science: With Applications in {R}},
publisher = {Chapman and Hall/CRC},
address = {Boca Raton},
URL = {https://r-spatial.org/book},
doi = {10.1201/9780429459016}
}
@Manual{magrittr,
title = {magrittr: A Forward-Pipe Operator for R},
author = {Stefan Milton Bache and Hadley Wickham},
year = {2022},
note = {R package version 2.0.3},
url = {https://CRAN.R-project.org/package=magrittr},
}
@book{dalgaardintroductory,
title={Introductory Statistics with R},
author={Dalgaard, Peter},
year={2008},
publisher={New York, NY: Springer New York},
url={https://link.springer.com/book/10.1007/978-0-387-79054-1}
}
@book{maronna2019robust,
title={Robust statistics: theory and methods (with R)},
author={Maronna, Ricardo A and Martin, R Douglas and Yohai, Victor J and Salibi{\'a}n-Barrera, Mat{\'\i}as},
year={2019},
publisher={John Wiley \& Sons},
url={https://onlinelibrary.wiley.com/doi/book/10.1002/9781119214656}
}
@book{james2013introduction,
title={An introduction to statistical learning},
author={James, Gareth and Witten, Daniela and Hastie, Trevor and Tibshirani, Robert and others},
volume={112},
year={2013},
publisher={Springer},
url={https://www.statlearning.com/}
}
@book{polin2011fetal,
title={Fetal and neonatal physiology},
edition={4},
author={Polin, Richard A and Fox, William W and Abman, Steven H},
year={2011},
publisher={Elsevier health sciences}
}
@book{rms2e,
title={Regression modeling strategies: with applications to linear models, logistic regression, and survival analysis},
author={Harrell, Frank E},
edition={2},
year={2015},
publisher={Springer},
doi={10.1007/978-3-319-19425-7},
url={https://link.springer.com/book/10.1007/978-3-319-19425-7}
}
@book{fox2015applied,
title={Applied regression analysis and generalized linear models},
author={Fox, John},
year={2015},
publisher={Sage publications}
}
@book{kuhn2022tidy,
title={Tidy modeling with R},
author={Kuhn, Max and Silge, Julia},
year={2022},
publisher={" O'Reilly Media, Inc."},
url={https://www.tmwr.org/}
}
@book{kleinman2009sas,
title={SAS and R: Data management, statistical analysis, and graphics},
author={Kleinman, Ken and Horton, Nicholas J},
year={2009},
publisher={Chapman and Hall/CRC},
isbn={9781466584495},
url={https://www.routledge.com/SAS-and-R-Data-Management-Statistical-Analysis-and-Graphics-Second-Edition/Kleinman-Horton/p/book/9781466584495}
}
@book{mccullaghnelder,
title={Generalized Linear Models},
author={McCullagh, Peter and Nelder, J.A.},
year={1989},
edition={2},
publisher={Routledge},
url={https://www.utstat.toronto.edu/~brunner/oldclass/2201s11/readings/glmbook.pdf}
}
@book{faraway2016extending,
title={Extending the linear model with R: generalized linear, mixed effects and nonparametric regression models},
author={Faraway, Julian J},
year={2016},
edition={2},
publisher={Chapman and Hall/CRC},
doi={10.1201/9781315382722},
url={https://www.taylorfrancis.com/books/mono/10.1201/9781315382722/extending-linear-model-julian-faraway}
}
@book{NahhasIRMPHR,
year={2024},
title={Introduction to Regression Methods for Public Health Using R},
author={Nahhas, Ramzi W.},
publisher={CRC Press},
url={https://www.bookdown.org/rwnahhas/RMPH/}
}
@book{NahhasIntroR,
year={2023},
title={An Introduction to R for Research},
author={Nahhas, Ramzi W.},
url={https://bookdown.org/rwnahhas/IntroToR/}
}
@article{rosenman1975coronary,
title={Coronary heart disease in the Western Collaborative Group Study: Final follow-up experience of 8 1/2 years},
author={Rosenman, Ray H and Brand, Richard J and Jenkins, C David and Friedman, Meyer and Straus, Reuben and Wurm, Moses},
journal={JAMA},
volume={233},
number={8},
pages={872--877},
year={1975},
publisher={American Medical Association},
doi={10.1001/jama.1975.03260080034016}
}
@book{searle2017matrix,
title={Matrix algebra useful for statistics},
author={Searle, Shayle R and Khuri, Andre I},
year={2017},
publisher={John Wiley \& Sons}
}
@book{banerjee2014linear,
title={Linear algebra and matrix analysis for statistics},
author={Banerjee, Sudipto and Roy, Anindya},
volume={181},
year={2014},
publisher={Crc Press Boca Raton},
url={https://www.routledge.com/Linear-Algebra-and-Matrix-Analysis-for-Statistics/Banerjee-Roy/p/book/9781420095388}
}
@book{khuri2003advanced,
title={Advanced calculus with applications in statistics},
author={Khuri, Andr{\'e} I},
year={2003},
publisher={John Wiley \& Sons},
isbn={978-0-471-39104-3},
url={https://www.wiley.com/en-us/Advanced+Calculus+with+Applications+in+Statistics%2C+2nd+Edition-p-9780471391043}
}
@book{selvin2001epidemiologic,
title={Epidemiologic analysis: A case-oriented approach},
author={Selvin, Steve},
year={2001},
publisher={Oxford University Press}
}
@book{hosmer2013applied,
title={Applied logistic regression},
author={Hosmer, David W and Lemeshow, Stanley and Sturdivant, Rodney X},
year={2013},
publisher={John Wiley \& Sons},
url={https://onlinelibrary.wiley.com/doi/book/10.1002/9781118548387}
}
@book{jewell2003statistics,
title={Statistics for epidemiology},
author={Jewell, Nicholas P},
year={2003},
publisher={Chapman and Hall/CRC},
location={Oxford, UK},
url={https://www.routledge.com/Statistics-for-Epidemiology/Jewell/p/book/9781584884330}
}
@book{clayton2013statistical,
title={Statistical models in epidemiology},
author={Clayton, David and Hills, Michael},
year={2013},
publisher={Oxford University Press},
url={https://global.oup.com/academic/product/statistical-models-in-epidemiology-9780199671182}
}
@book{kalbfleisch2011statistical,
title={The statistical analysis of failure time data},
author={Kalbfleisch, John D and Prentice, Ross L},
year={2011},
publisher={John Wiley \& Sons}
}
@book{agresti2012categorical,
title={Categorical data analysis},
author={Agresti, Alan},
volume={792},
year={2012},
publisher={John Wiley \& Sons},
url={https://www.wiley.com/en-us/Categorical+Data+Analysis%2C+3rd+Edition-p-9780470463635}
}
@book{agresti2018introcat,
title={An Introduction to Categorical Data Analysis},
author={Agresti, Alan},
year={2018},
publisher={John Wiley \& Sons},
url={https://www.wiley.com/en-us/An+Introduction+to+Categorical+Data+Analysis%2C+3rd+Edition-p-9781119405283}
}
@article{copelan1991treatment,
title={Treatment for acute myelocytic leukemia with allogeneic bone marrow transplantation following preparation with BuCy2},
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}
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@BOOK{Faraway2025-io,
title = "Linear models with {R}",
author = "Faraway, Julian J",
abstract = "Linear Models with R, Third Edition explains how to use linear
models in physical science, engineering, social science, and
business applications. The book incorporates several improvements
that reflect how the world of R has expanded since the
publication of the second edition.",
month = Feb,
year = 2025,
language = "en",
isbn={1032583983},
url={https://www.routledge.com/Linear-Models-with-R/Faraway/p/book/9781032583983}
}