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@@ -1 +1 @@
-52c4adc9
+66edcd75

Contributing.html

@@ -353,7 +353,7 @@ <h2 id="toc-title">Table of contents</h2>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">Last modified: 2024-05-11: 15:20:36 (PM)</p>
+      <p class="date">Last modified: 2024-06-05: 12:20:09 (PM)</p>
     </div>
   </div>
 
@@ -373,6 +373,7 @@ <h2 data-number="I.1" class="anchored" data-anchor-id="style-guide"><span class=
 <li><p>More structure (headers, labels) is better.</p></li>
 <li><p>Make each conceptual chunk as compact as possible:</p>
 <ul>
+<li>Decompose large, complicated, difficult concepts into smaller, simpler, and easier pieces.</li>
 <li>Decompose long derivations into smaller lemmas.</li>
 <li>When manipulating part of a larger expression, isolate that part in a lemma.</li>
 </ul></li>
@@ -1047,53 +1048,55 @@ <h2 data-number="I.5" class="anchored" data-anchor-id="additional-references"><s
 <span id="cb1-14"><a href="#cb1-14" aria-hidden="true" tabindex="-1"></a><span class="ss">- </span>More structure (headers, labels) is better.</span>
 <span id="cb1-15"><a href="#cb1-15" aria-hidden="true" tabindex="-1"></a></span>
 <span id="cb1-16"><a href="#cb1-16" aria-hidden="true" tabindex="-1"></a><span class="ss">- </span>Make each conceptual chunk as compact as possible:</span>
-<span id="cb1-17"><a href="#cb1-17" aria-hidden="true" tabindex="-1"></a><span class="ss">  - </span>Decompose long derivations into smaller lemmas.</span>
-<span id="cb1-18"><a href="#cb1-18" aria-hidden="true" tabindex="-1"></a><span class="ss">  - </span>When manipulating part of a larger expression, isolate that part in a lemma.</span>
-<span id="cb1-19"><a href="#cb1-19" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-20"><a href="#cb1-20" aria-hidden="true" tabindex="-1"></a><span class="fu">## Fixing typos</span></span>
+<span id="cb1-17"><a href="#cb1-17" aria-hidden="true" tabindex="-1"></a><span class="ss">  - </span>Decompose large, complicated, difficult concepts into smaller, simpler, and easier pieces.</span>
+<span id="cb1-18"><a href="#cb1-18" aria-hidden="true" tabindex="-1"></a><span class="ss">  - </span>Decompose long derivations into smaller lemmas.</span>
+<span id="cb1-19"><a href="#cb1-19" aria-hidden="true" tabindex="-1"></a><span class="ss">  - </span>When manipulating part of a larger expression, isolate that part in a lemma.</span>
+<span id="cb1-20"><a href="#cb1-20" aria-hidden="true" tabindex="-1"></a>  </span>
 <span id="cb1-21"><a href="#cb1-21" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-22"><a href="#cb1-22" aria-hidden="true" tabindex="-1"></a>This book is written using <span class="co">[</span><span class="ot">Quarto</span><span class="co">](https://quarto.org/docs/books/)</span>.</span>
-<span id="cb1-23"><a href="#cb1-23" aria-hidden="true" tabindex="-1"></a>You can fix typos, spelling mistakes, or grammatical errors directly using the GitHub web interface by making changes in the corresponding *source* file. </span>
-<span id="cb1-24"><a href="#cb1-24" aria-hidden="true" tabindex="-1"></a>This generally means you'll need to edit a <span class="in">`.qmd`</span> file. </span>
-<span id="cb1-25"><a href="#cb1-25" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-26"><a href="#cb1-26" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-27"><a href="#cb1-27" aria-hidden="true" tabindex="-1"></a><span class="fu">## Bigger changes</span></span>
+<span id="cb1-22"><a href="#cb1-22" aria-hidden="true" tabindex="-1"></a><span class="fu">## Fixing typos</span></span>
+<span id="cb1-23"><a href="#cb1-23" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb1-24"><a href="#cb1-24" aria-hidden="true" tabindex="-1"></a>This book is written using <span class="co">[</span><span class="ot">Quarto</span><span class="co">](https://quarto.org/docs/books/)</span>.</span>
+<span id="cb1-25"><a href="#cb1-25" aria-hidden="true" tabindex="-1"></a>You can fix typos, spelling mistakes, or grammatical errors directly using the GitHub web interface by making changes in the corresponding *source* file. </span>
+<span id="cb1-26"><a href="#cb1-26" aria-hidden="true" tabindex="-1"></a>This generally means you'll need to edit a <span class="in">`.qmd`</span> file. </span>
+<span id="cb1-27"><a href="#cb1-27" aria-hidden="true" tabindex="-1"></a></span>
 <span id="cb1-28"><a href="#cb1-28" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-29"><a href="#cb1-29" aria-hidden="true" tabindex="-1"></a>If you want to make a bigger change, it's a good idea to first file an issue and make sure someone from the development team agrees that it’s needed. </span>
+<span id="cb1-29"><a href="#cb1-29" aria-hidden="true" tabindex="-1"></a><span class="fu">## Bigger changes</span></span>
 <span id="cb1-30"><a href="#cb1-30" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-31"><a href="#cb1-31" aria-hidden="true" tabindex="-1"></a><span class="fu">### [Pull request](https://usethis.r-lib.org/articles/pr-functions.html#whats-a-pull-request) process</span></span>
+<span id="cb1-31"><a href="#cb1-31" aria-hidden="true" tabindex="-1"></a>If you want to make a bigger change, it's a good idea to first file an issue and make sure someone from the development team agrees that it’s needed. </span>
 <span id="cb1-32"><a href="#cb1-32" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-33"><a href="#cb1-33" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>Fork the package and clone onto your computer. If you haven't done this before, we recommend using <span class="in">`usethis::create_from_github("d-morrison/rme", fork = TRUE)`</span>.</span>
+<span id="cb1-33"><a href="#cb1-33" aria-hidden="true" tabindex="-1"></a><span class="fu">### [Pull request](https://usethis.r-lib.org/articles/pr-functions.html#whats-a-pull-request) process</span></span>
 <span id="cb1-34"><a href="#cb1-34" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-35"><a href="#cb1-35" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>Install all development dependencies with <span class="in">`devtools::install_dev_deps()`</span>. Make sure you can build the book by running <span class="in">`quarto render`</span> in a Terminal.</span>
+<span id="cb1-35"><a href="#cb1-35" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>Fork the package and clone onto your computer. If you haven't done this before, we recommend using <span class="in">`usethis::create_from_github("d-morrison/rme", fork = TRUE)`</span>.</span>
 <span id="cb1-36"><a href="#cb1-36" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-37"><a href="#cb1-37" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>Create a Git branch for your pull request (PR). </span>
-<span id="cb1-38"><a href="#cb1-38" aria-hidden="true" tabindex="-1"></a>We recommend using <span class="in">`usethis::pr_init("brief-description-of-change")`</span>. </span>
-<span id="cb1-39"><a href="#cb1-39" aria-hidden="true" tabindex="-1"></a>Details at <span class="ot">&lt;https://usethis.r-lib.org/articles/pr-functions.html&gt;</span></span>
-<span id="cb1-40"><a href="#cb1-40" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-41"><a href="#cb1-41" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>Make your changes, commit to git, and then create a PR by running <span class="in">`usethis::pr_push()`</span>, and following the prompts in your browser.</span>
-<span id="cb1-42"><a href="#cb1-42" aria-hidden="true" tabindex="-1"></a>    The title of your PR should briefly describe the change.</span>
-<span id="cb1-43"><a href="#cb1-43" aria-hidden="true" tabindex="-1"></a>    The body of your PR should contain <span class="in">`Fixes #issue-number`</span>.</span>
-<span id="cb1-44"><a href="#cb1-44" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-45"><a href="#cb1-45" aria-hidden="true" tabindex="-1"></a><span class="ss">*  </span>Add a bullet to the top of <span class="in">`NEWS.md`</span> (i.e. just below the first header). Follow the style described in <span class="ot">&lt;https://style.tidyverse.org/news.html&gt;</span>.</span>
+<span id="cb1-37"><a href="#cb1-37" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>Install all development dependencies with <span class="in">`devtools::install_dev_deps()`</span>. Make sure you can build the book by running <span class="in">`quarto render`</span> in a Terminal.</span>
+<span id="cb1-38"><a href="#cb1-38" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb1-39"><a href="#cb1-39" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>Create a Git branch for your pull request (PR). </span>
+<span id="cb1-40"><a href="#cb1-40" aria-hidden="true" tabindex="-1"></a>We recommend using <span class="in">`usethis::pr_init("brief-description-of-change")`</span>. </span>
+<span id="cb1-41"><a href="#cb1-41" aria-hidden="true" tabindex="-1"></a>Details at <span class="ot">&lt;https://usethis.r-lib.org/articles/pr-functions.html&gt;</span></span>
+<span id="cb1-42"><a href="#cb1-42" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb1-43"><a href="#cb1-43" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>Make your changes, commit to git, and then create a PR by running <span class="in">`usethis::pr_push()`</span>, and following the prompts in your browser.</span>
+<span id="cb1-44"><a href="#cb1-44" aria-hidden="true" tabindex="-1"></a>    The title of your PR should briefly describe the change.</span>
+<span id="cb1-45"><a href="#cb1-45" aria-hidden="true" tabindex="-1"></a>    The body of your PR should contain <span class="in">`Fixes #issue-number`</span>.</span>
 <span id="cb1-46"><a href="#cb1-46" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-47"><a href="#cb1-47" aria-hidden="true" tabindex="-1"></a><span class="fu">### Code style</span></span>
+<span id="cb1-47"><a href="#cb1-47" aria-hidden="true" tabindex="-1"></a><span class="ss">*  </span>Add a bullet to the top of <span class="in">`NEWS.md`</span> (i.e. just below the first header). Follow the style described in <span class="ot">&lt;https://style.tidyverse.org/news.html&gt;</span>.</span>
 <span id="cb1-48"><a href="#cb1-48" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-49"><a href="#cb1-49" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>New code should follow the tidyverse <span class="co">[</span><span class="ot">style guide</span><span class="co">](https://style.tidyverse.org)</span>. </span>
-<span id="cb1-50"><a href="#cb1-50" aria-hidden="true" tabindex="-1"></a>    You can use the <span class="co">[</span><span class="ot">styler</span><span class="co">](https://CRAN.R-project.org/package=styler)</span> package to apply these styles, but please don't restyle code that has nothing to do with your PR.  </span>
-<span id="cb1-51"><a href="#cb1-51" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-52"><a href="#cb1-52" aria-hidden="true" tabindex="-1"></a><span class="fu">## Code of Conduct</span></span>
+<span id="cb1-49"><a href="#cb1-49" aria-hidden="true" tabindex="-1"></a><span class="fu">### Code style</span></span>
+<span id="cb1-50"><a href="#cb1-50" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb1-51"><a href="#cb1-51" aria-hidden="true" tabindex="-1"></a><span class="ss">*   </span>New code should follow the tidyverse <span class="co">[</span><span class="ot">style guide</span><span class="co">](https://style.tidyverse.org)</span>. </span>
+<span id="cb1-52"><a href="#cb1-52" aria-hidden="true" tabindex="-1"></a>    You can use the <span class="co">[</span><span class="ot">styler</span><span class="co">](https://CRAN.R-project.org/package=styler)</span> package to apply these styles, but please don't restyle code that has nothing to do with your PR.  </span>
 <span id="cb1-53"><a href="#cb1-53" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-54"><a href="#cb1-54" aria-hidden="true" tabindex="-1"></a>Please note that the <span class="in">`rme`</span> project is released with a</span>
-<span id="cb1-55"><a href="#cb1-55" aria-hidden="true" tabindex="-1"></a><span class="co">[</span><span class="ot">Contributor Code of Conduct</span><span class="co">](CODE_OF_CONDUCT.md)</span>. By contributing to this</span>
-<span id="cb1-56"><a href="#cb1-56" aria-hidden="true" tabindex="-1"></a>project you agree to abide by its terms.</span>
-<span id="cb1-57"><a href="#cb1-57" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-58"><a href="#cb1-58" aria-hidden="true" tabindex="-1"></a><span class="fu">## Additional references</span></span>
+<span id="cb1-54"><a href="#cb1-54" aria-hidden="true" tabindex="-1"></a><span class="fu">## Code of Conduct</span></span>
+<span id="cb1-55"><a href="#cb1-55" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb1-56"><a href="#cb1-56" aria-hidden="true" tabindex="-1"></a>Please note that the <span class="in">`rme`</span> project is released with a</span>
+<span id="cb1-57"><a href="#cb1-57" aria-hidden="true" tabindex="-1"></a><span class="co">[</span><span class="ot">Contributor Code of Conduct</span><span class="co">](CODE_OF_CONDUCT.md)</span>. By contributing to this</span>
+<span id="cb1-58"><a href="#cb1-58" aria-hidden="true" tabindex="-1"></a>project you agree to abide by its terms.</span>
 <span id="cb1-59"><a href="#cb1-59" aria-hidden="true" tabindex="-1"></a></span>
-<span id="cb1-60"><a href="#cb1-60" aria-hidden="true" tabindex="-1"></a>For a detailed discussion on contributing to this and other projects, </span>
-<span id="cb1-61"><a href="#cb1-61" aria-hidden="true" tabindex="-1"></a>please see the <span class="co">[</span><span class="ot">Tidyverse development contributing guide</span><span class="co">](https://rstd.io/tidy-contrib)</span> </span>
-<span id="cb1-62"><a href="#cb1-62" aria-hidden="true" tabindex="-1"></a>and the <span class="co">[</span><span class="ot">Tidyverse code review principles</span><span class="co">](https://code-review.tidyverse.org/)</span>. </span>
-<span id="cb1-63"><a href="#cb1-63" aria-hidden="true" tabindex="-1"></a>This project is not part of the tidyverse, but we have borrowed their development processes.</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<span id="cb1-60"><a href="#cb1-60" aria-hidden="true" tabindex="-1"></a><span class="fu">## Additional references</span></span>
+<span id="cb1-61"><a href="#cb1-61" aria-hidden="true" tabindex="-1"></a></span>
+<span id="cb1-62"><a href="#cb1-62" aria-hidden="true" tabindex="-1"></a>For a detailed discussion on contributing to this and other projects, </span>
+<span id="cb1-63"><a href="#cb1-63" aria-hidden="true" tabindex="-1"></a>please see the <span class="co">[</span><span class="ot">Tidyverse development contributing guide</span><span class="co">](https://rstd.io/tidy-contrib)</span> </span>
+<span id="cb1-64"><a href="#cb1-64" aria-hidden="true" tabindex="-1"></a>and the <span class="co">[</span><span class="ot">Tidyverse code review principles</span><span class="co">](https://code-review.tidyverse.org/)</span>. </span>
+<span id="cb1-65"><a href="#cb1-65" aria-hidden="true" tabindex="-1"></a>This project is not part of the tidyverse, but we have borrowed their development processes.</span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </div></div></div></div></div>
 </div> <!-- /content -->
 <footer class="footer">

Linear-models-overview.html

@@ -3920,15 +3920,15 @@ <h3 class="anchored">Note</h3>
 <tbody>
 <tr class="odd">
 <td style="text-align: left;">full</td>
-<td style="text-align: right;">7.125</td>
+<td style="text-align: right;">7.169</td>
 <td style="text-align: right;">0.4805</td>
 <td style="text-align: right;">0.3831</td>
 <td style="text-align: right;">5.956</td>
 <td style="text-align: right;">-61.84</td>
 </tr>
 <tr class="even">
 <td style="text-align: left;">reduced</td>
-<td style="text-align: right;">6.626</td>
+<td style="text-align: right;">6.737</td>
 <td style="text-align: right;">0.4454</td>
 <td style="text-align: right;">0.3802</td>
 <td style="text-align: right;">5.971</td>
@@ -4065,10 +4065,10 @@ <h3 class="anchored">Note</h3>
 <details class="code-fold"><summary>Show R code</summary><div class="sourceCode" id="cb105"><pre class="downlit sourceCode r code-with-copy"><code class="sourceCode R"><span><span class="fu"><a href="https://rdrr.io/r/stats/coef.html">coef</a></span><span class="op">(</span><span class="va">cvfit</span>, s <span class="op">=</span> <span class="st">"lambda.1se"</span><span class="op">)</span></span>
 <span><span class="co">#&gt; 4 x 1 sparse Matrix of class "dgCMatrix"</span></span>
 <span><span class="co">#&gt;                  s1</span></span>
-<span><span class="co">#&gt; (Intercept) 34.4241</span></span>
+<span><span class="co">#&gt; (Intercept) 34.1090</span></span>
 <span><span class="co">#&gt; age          .     </span></span>
-<span><span class="co">#&gt; weight      -0.0662</span></span>
-<span><span class="co">#&gt; protein      0.6607</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
+<span><span class="co">#&gt; weight      -0.1041</span></span>
+<span><span class="co">#&gt; protein      0.9441</span></span></code><button title="Copy to Clipboard" class="code-copy-button"><i class="bi"></i></button></pre></div>
 </details>
 </div>
 </section></section></section><section id="categorical-covariates-with-more-than-two-levels" class="level2" data-number="2.10"><h2 data-number="2.10" class="anchored" data-anchor-id="categorical-covariates-with-more-than-two-levels">

Linear-models-overview_files/figure-html/unnamed-chunk-104-1.png

@@ -389,7 +389,7 @@ <h2 id="toc-title">Table of contents</h2>
     <div>
     <div class="quarto-title-meta-heading">Published</div>
     <div class="quarto-title-meta-contents">
-      <p class="date">Last modified: 2024-06-05: 12:02:43 (PM)</p>
+      <p class="date">Last modified: 2024-06-05: 13:23:22 (PM)</p>
     </div>
   </div>
 

Linear-models-overview_files/figure-html/unnamed-chunk-98-1.png

@@ -2073,7 +2073,7 @@
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