diff --git a/cazy_little_helper/create_model.py b/cazy_little_helper/create_model.py index 090c5ed..6326c33 100644 --- a/cazy_little_helper/create_model.py +++ b/cazy_little_helper/create_model.py @@ -7,8 +7,8 @@ @author: dabane-ghassan """ from __future__ import absolute_import -from parsers import Parser -from model import Model +from cazy_little_helper.parsers import Parser +from cazy_little_helper.model import Model def launch_create_model( path: str, diff --git a/cazy_little_helper/find_ids.py b/cazy_little_helper/find_ids.py index bb6992a..57bf71d 100644 --- a/cazy_little_helper/find_ids.py +++ b/cazy_little_helper/find_ids.py @@ -6,8 +6,8 @@ @author: dabane-ghassan """ from __future__ import absolute_import -from parsers import Parser -from toolkit import Toolkit +from cazy_little_helper.parsers import Parser +from cazy_little_helper.toolkit import Toolkit def launch_find( ids_file: str, diff --git a/cazy_little_helper/model.py b/cazy_little_helper/model.py index 327d933..14e3703 100644 --- a/cazy_little_helper/model.py +++ b/cazy_little_helper/model.py @@ -18,8 +18,8 @@ from sklearn.calibration import CalibratedClassifierCV from sklearn.utils import shuffle from joblib import dump -from preprocessor import Preprocessor -from scraper import Scraper +from cazy_little_helper.preprocessor import Preprocessor +from cazy_little_helper.scraper import Scraper class Model: """A class to represent the architecture of CAZy's little helper, diff --git a/cazy_little_helper/pipeline.py b/cazy_little_helper/pipeline.py index 91c14ef..f956520 100644 --- a/cazy_little_helper/pipeline.py +++ b/cazy_little_helper/pipeline.py @@ -10,10 +10,10 @@ import numpy as np import pandas as pd from metapub.pubmedcentral import get_pmcid_for_otherid -from scraper import Scraper -from preprocessor import Preprocessor -from scorer import Scorer -from toolkit import Toolkit +from cazy_little_helper.scraper import Scraper +from cazy_little_helper.preprocessor import Preprocessor +from cazy_little_helper.scorer import Scorer +from cazy_little_helper.toolkit import Toolkit class Pipeline: """A prediction pipeline class. diff --git a/cazy_little_helper/predict.py b/cazy_little_helper/predict.py index 153ac78..489c4a5 100644 --- a/cazy_little_helper/predict.py +++ b/cazy_little_helper/predict.py @@ -7,8 +7,8 @@ @author: dabane-ghassan """ from __future__ import absolute_import -from parsers import Parser -from pipeline import Pipeline +from cazy_little_helper.parsers import Parser +from cazy_little_helper.pipeline import Pipeline def launch_pipeline( input_data: str, diff --git a/setup.py b/setup.py index daf058e..20e16cb 100644 --- a/setup.py +++ b/setup.py @@ -5,14 +5,14 @@ setuptools.setup( name='cazy-little-helper', - version='0.1', + version='1.0', description='A biocuration assistant for the CAZy database.', long_description=long_description, long_description_content_type="text/markdown", url='https://github.com/dabane-ghassan/cazy-little-helper', author='dabane-ghassan', author_email = 'dabane.ghassan@gmail.com', - #download_url = 'https://github.com/dabane-ghassan/dnazip/archive/v0.2.tar.gz', + download_url = 'https://github.com/dabane-ghassan/cazy-little-helper/archive/refs/tags/v1.0.tar.gz', license='MIT', packages=setuptools.find_packages(include=['cazy-little-helper', 'cazy-little-helper.*']), classifiers=[ @@ -30,10 +30,12 @@ 'mock >= 4.0.0', ] }, - #entry_points={ - # 'gui_scripts': [ - # 'dnazip=dnazip.main:main' - # ] - #}, + entry_points={ + 'console_scripts': [ + 'predict=cazy_little_helper.predict:main', + 'create=cazy_little_helper.create_model:main', + 'find=cazy_little_helper.find_ids:main', + ] + }, python_requires='>=3.6', )