_pkgdown.yml

reference:
  - title: "Phylogenetic Diversity"
    desc: >
      Functions to calculate alpha and beta phylogenetic diversity
    contents: 
      - starts_with("ps")
      - pcd
      - pcd_pred
  - title: "Phylogenetic Correlations"
    desc: "Functions to calculate correlations while accounting for phylogenetic relationships."
    contents:
      - cor_phylo
      - boot_ci
      - refit_boots
  - title: "Phylogenetic Generalized Linear Mixed Models"
    desc: "Functions to fit PGLMMs."
    contents:
      - matches("pglmm")
      - matches("PGLMM")
      - get_design_matrix
      - plot_data
      - plot_bayes
  - title: "Helper Functions"
    desc: "Functions to help with data processing."
    contents:
      - vcv2
      - rm_site_noobs
      - rm_sp_noobs
      - '%nin%'
      - align_comm_V
      - match_comm_tree
  - title: "Data Sets"
    desc: "Examplary data sets used in the package"
    contents:
      - comm_a
      - comm_b
      - traits
      - phylotree
      - envi
      - oldfield