diff --git a/bbconf/_version.py b/bbconf/_version.py index 3dc1f76..485f44a 100644 --- a/bbconf/_version.py +++ b/bbconf/_version.py @@ -1 +1 @@ -__version__ = "0.1.0" +__version__ = "0.1.1" diff --git a/bbconf/schemas/bedfiles_schema.yaml b/bbconf/schemas/bedfiles_schema.yaml index dfb7fe8..b019b4c 100644 --- a/bbconf/schemas/bedfiles_schema.yaml +++ b/bbconf/schemas/bedfiles_schema.yaml @@ -6,9 +6,11 @@ md5sum: description: BED file checksum bedfile: type: file + label: bed description: BED file bigbedfile: type: file + label: bigBed description: bigBed file regions_no: type: integer @@ -66,30 +68,39 @@ promotercore_percentage: description: Promoter core percentage tssdist: type: image + label: TSS_distance description: Region-TSS distance plot chrombins: type: image + label: Chromosome_bins description: Regions distribution over chromosomes plot gccontent: type: image + label: GC_content description: GC content plot paritions: type: image + label: Regions_dist_partitions description: Regions distribution over genomic partitions plot expected_partitions: type: image + label: Expected_partitions description: Expected distribution over genomic partitions plot cumulative_partitions: type: image + label: Cumulative_partitions description: Cumulative distribution over genomic partitions plot widths_histogram: type: image + label: Widths_histogram description: Quantile-trimmed histogram of widths neighbor_distances: type: image + label: Neighbor_distance description: Distance between neighbor regions open_chromatin: type: image + label: Open_chromatin description: Cell specific enrichment for open chromatin plot other: type: object diff --git a/bbconf/schemas/bedsets_schema.yaml b/bbconf/schemas/bedsets_schema.yaml index 5fb015e..cbbc1f8 100644 --- a/bbconf/schemas/bedsets_schema.yaml +++ b/bbconf/schemas/bedsets_schema.yaml @@ -6,24 +6,28 @@ md5sum: description: BED set checksum bedset_tar_archive_path: type: file - label: BED set archive + label: BED_set_archive description: Relative path to the TAR archive with BED files in this BED set bedset_igd_database_path: type: file - label: BED set iGD database + label: iGD_database description: Relative path to the iGD database bedset_pep: type: file - label: BED set PEP + label: PEP description: Relative path to PEP bedset_bedfiles_gd_stats: - type: object - label: BED files statistics + type: file + label: BED_statistics description: Statistics of BED files in this BED set bedset_gd_stats: - type: object - label: BED set statistics + type: file + label: BED_set_statistics description: BED set statistics +hubfile_path: + type: file + label: Hub_file + description: Path to the hub.txt files for the BED set bedset_means: type: object description: Mean statistics of the BED files in this BED set @@ -32,11 +36,8 @@ bedset_standard_deviation: description: Standard deviations of statistics of the BED files in this BED set region_commonality: type: image + label: Region_commonality description: Region commonality plot -hubfile_path: - type: file - label: BED set hub file - description: Path to the hub.txt files for the BED set genome: type: string description: genome assembly of the BED set diff --git a/docs/changelog.md b/docs/changelog.md index 2b6d781..7c2e810 100644 --- a/docs/changelog.md +++ b/docs/changelog.md @@ -2,6 +2,10 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html) and [Keep a Changelog](https://keepachangelog.com/en/1.0.0/) format. +## [0.1.1] - 2021-04-15 +### added +- added new fields in the bedfiles and bedsets schema + ## [0.1.0] - 2021-02-22 **This release introduces backwards incompatible changes** ### Changed @@ -23,4 +27,4 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm ## [0.0.1] - 2020-02-05 ### Added -- initial project release \ No newline at end of file +- initial project release