Updated to pydantic2

Author: khoroshevskyi

bbconf/bbconf.py

@@ -607,6 +607,7 @@ def get_thumbnail_uri(
         :param record_type: table_name ["bed", "bedset"]
         :param record_id: record identifier
         :param result_id: column name (result name)
+        :param access_id: access id (e.g. http, s3, etc.)
         :return: string with thumbnail
         """
 

bbconf/models.py

@@ -18,11 +18,11 @@ class AccessMethod(BaseModel):
 
 class DRSModel(BaseModel):
     id: str
-    name: Optional[str]
+    name: Optional[str] = None
     self_uri: str
     size: str
-    created_time: Optional[datetime.datetime]
-    updated_time: Optional[datetime.datetime]
+    created_time: Optional[datetime.datetime] = None
+    updated_time: Optional[datetime.datetime] = None
     checksums: str
     access_methods: List[AccessMethod]
     description: Optional[str] = None

docs/changelog.md

@@ -4,7 +4,7 @@ This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.htm
 
 ## [0.4.0] - 2023-12-18
 ### Change
-- bbconf to use pipestat v0.4.1 and SQLModel
+- bbconf to use pipestat v0.6.0 and SQLModel
 - Fixed tests
 
 ### Added

requirements/requirements-all.txt

@@ -1,4 +1,4 @@
 yacman>=0.9.1
-pipestat[db-backend]==0.6.0a9
+pipestat[db-backend]>=0.6.0a10
 geniml>=0.0.1
 psycopg>=3.1.15