r_ubuntu.yaml

name: R-ubuntu

on:
 push:
   branches:
     - main
 pull_request:
   branches:
     - main

jobs:
 R-CMD-check:
   runs-on: ubuntu-20.04
   strategy:
     matrix:
       r-version: ['4.3.2', '4.2.0', '4.2.1']
     fail-fast: false

   env:
     R_LIBS_USER: /home/runner/work/_temp/Library
     TZ: UTC
     R_CHECK_SYSTEM_CLOCK: FALSE
     NOT_CRAN: true
     RSPM: https://packagemanager.posit.co/cran/__linux__/focal/latest
     RENV_CONFIG_REPOS_OVERRIDE: https://packagemanager.posit.co/cran/__linux__/focal/latest

   steps:
     - uses: actions/checkout@v3

     # 添加磁盤清理步驟
     - name: Free Disk Space
       run: |
         sudo rm -rf /usr/share/dotnet
         sudo rm -rf /usr/local/lib/android
         sudo rm -rf /opt/ghc
         sudo rm -rf /opt/hostedtoolcache/CodeQL
         df -h

     - name: Cache R dependencies
       uses: actions/cache@v3
       with:
         path: ~/R/x86_64-pc-linux-gnu-library/
         key: ${{ runner.os }}-r-${{ matrix.r-version }}-${{ hashFiles('**/renv.lock') }}
         restore-keys: ${{ runner.os }}-r-${{ matrix.r-version }}-

     - name: Setup R
       uses: r-lib/actions/setup-r@v2
       with:
         use-public-rspm: true
         r-version: ${{ matrix.r-version }}

     # Install Matrix first with version control
     - name: Install R Matrix package
       run: |
         install.packages('remotes')
         version <- getRversion()
         tryCatch({
           if (version >= "4.3.2") {
             remotes::install_version("Matrix", version = "1.5-1", repos = "https://cran.r-project.org")
           } else if (version >= "4.2.0" && version < "4.3.0") {
             remotes::install_version("Matrix", version = "1.4-1", repos = "https://cran.r-project.org", force = TRUE)
           } else if (version >= "4.1.0" && version < "4.2.0") {
             remotes::install_version("Matrix", version = "1.3-4", repos = "https://cran.r-project.org")
           }
           message(sprintf("R version: %s, Matrix version: %s", version, packageVersion("Matrix")))
         }, error = function(e) {
           message("Error installing Matrix: ", e$message)
           if (version < "4.3.0") {
             message("Attempting fallback installation...")
             remotes::install_version("Matrix", version = "1.4-1",
                                    repos = "https://cran.r-project.org",
                                    force = TRUE)
           }
         })
       shell: Rscript {0}

     # Verify Matrix installation
     - name: Verify Matrix Installation
       run: |
         tryCatch({
           if (!requireNamespace("Matrix", quietly = TRUE)) {
             message("Matrix package not installed properly")
             quit(status = 1)
           }
           version <- as.character(packageVersion("Matrix"))
           r_version <- getRversion()
           message("Current configuration:")
           message("R version: ", r_version)
           message("Matrix version: ", version)

           # 驗證版本相容性
           if (r_version >= "4.3.2" && version != "1.5-1") {
             message("Warning: Unexpected Matrix version for R 4.3.2+")
           } else if (r_version >= "4.2.0" && r_version < "4.3.0" && version != "1.4-1") {
             message("Warning: Unexpected Matrix version for R 4.2.x")
           } else if (r_version >= "4.1.0" && r_version < "4.2.0" && version != "1.3-4") {
             message("Warning: Unexpected Matrix version for R 4.1.x")
           }
         }, error = function(e) {
           message("Error during Matrix verification: ", e$message)
           quit(status = 1)
         })
       shell: Rscript {0}

     - name: Set up Python
       uses: actions/setup-python@v4
       with:
         python-version: '3.10.x'

     - name: Setup pip cache
       uses: actions/cache@v3
       with:
         path: ~/.cache/pip
         key: ${{ runner.os }}-pip-${{ hashFiles('**/requirements.txt') }}
         restore-keys: |
           ${{ runner.os }}-pip-

     - name: Create and configure venv
       run: |
         python -m venv flair_env
         source flair_env/bin/activate
         mkdir -p ~/.cache/pip
         pip install --upgrade pip
         # 分步安裝以減少內存使用
         pip install --no-cache-dir scipy==1.12.0
         pip install --no-cache-dir torch --index-url https://download.pytorch.org/whl/cpu
         pip install --no-cache-dir flair
         pip install --no-cache-dir gensim==4.3.2
         deactivate

     - name: Install system dependencies
       run: |
         sudo apt-get update
         sudo apt-get install -y --no-install-recommends \
           libcurl4-openssl-dev \
           libssl-dev \
           libxml2-dev \
           libfontconfig1-dev \
           libharfbuzz-dev \
           libfribidi-dev \
           libfreetype6-dev \
           libpng-dev \
           libtiff5-dev \
           libjpeg-dev

     - name: Install base R dependencies
       run: |
         options(repos = c(CRAN = "https://cloud.r-project.org"))
         install.packages(c("remotes", "rcmdcheck", "reticulate", "renv", "knitr",
                          "rmarkdown", "lsa", "purrr", "testthat", "ggplot2"))
       shell: Rscript {0}

     - name: Restore R environment
       run: |
         if (!requireNamespace('renv', quietly = TRUE)) install.packages('renv')
         options(warn = 2)
         tryCatch({
           renv::restore()
         }, error = function(e) {
           message("Error in renv::restore(): ", e$message)
           install.packages(c("knitr", "rmarkdown", "lsa", "purrr", "ggplot2"))
         })
       shell: Rscript {0}

     - name: Check R package
       run: |
         source flair_env/bin/activate
         export TMPDIR="/tmp/R-pkg-tmp"
         mkdir -p $TMPDIR
         R CMD build . --no-build-vignettes
         R CMD check *tar.gz --no-build-vignettes --no-manual --no-tests --no-examples || true
         deactivate
       shell: bash