r_macos.yml

# This workflow uses actions that are not certified by GitHub.
# They are provided by a third-party and are governed by
# separate terms of service, privacy policy, and support
# documentation.
#
# See https://github.com/r-lib/actions/tree/master/examples#readme for
# additional example workflows available for the R community.
# name: R-MacOS
#
# on:
#   push:
#     branches: [ "main" ]
#   pull_request:
#     branches: [ "main" ]
#
# permissions:
#   contents: read
#
# jobs:
#   build:
#     runs-on: macos-latest
#
#     strategy:
#       matrix:
#         r-version: ['4.4.0', '4.3.2']
#
#     steps:
#       - uses: actions/checkout@v3
#
#       - name: Update Homebrew
#         run: |
#           brew update
#
#       - name: Install pandoc
#         run: |
#           for i in {1..3}; do
#             brew install pandoc && break || sleep 15
#           done
#
#       - name: Install gfortran and configure Makevars
#         run: |
#           brew install gcc
#           mkdir -p ~/.R
#           touch ~/.R/Makevars
#           echo "FC=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars
#           echo "F77=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars
#           echo "FLIBS=-L$(brew --prefix)/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars
#           echo "LDFLAGS=-L$(brew --prefix)/lib/gcc/current" >> ~/.R/Makevars
#
#       - name: Set up R ${{ matrix.r-version }}
#         uses: r-lib/actions/setup-r@v2
#         with:
#           r-version: ${{ matrix.r-version }}
#
#       - name: Install R dependencies
#         run: |
#           Rscript -e "install.packages(c('remotes', 'rcmdcheck', 'reticulate', 'renv', 'knitr', 'rmarkdown', 'lsa', 'purrr', 'testthat', 'htmltools'), repos='https://cran.r-project.org')"
#           Rscript -e "if (getRversion() >= '4.4.0') remotes::install_version('Matrix', version = '1.5.3') else install.packages('Matrix', type = 'binary')"
#           Rscript -e "remotes::install_version('htmltools', version = '0.5.8')"
#           Rscript -e "renv::restore()"
#
#       - name: Set up Python
#         uses: actions/setup-python@v2
#         with:
#           python-version: '3.10.x'
#
#       - name: Install Python virtualenv
#         run: pip install virtualenv
#
#       - name: Create Python virtual environment
#         run: virtualenv flair_env
#
#       - name: Install Python dependencies in virtual environment
#         run: |
#           source flair_env/bin/activate
#           pip install --upgrade pip
#           pip install scipy==1.12.0
#           pip install flair
#
#       - name: Remove Python cache files
#         run: find . -name '*.pyc' -delete
#
#       - name: Check (with virtual environment)
#         run: |
#           source flair_env/bin/activate
#           R CMD build --no-build-vignettes .
#         shell: bash
# name: R-MacOS
#
# on:
#   push:
#     branches: [ "main" ]
#   pull_request:
#     branches: [ "main" ]
#
# permissions:
#   contents: read
#
# jobs:
#   build:
#     runs-on: macos-latest
#     strategy:
#       matrix:
#         r-version: ['4.4.0', '4.3.2']
#       fail-fast: false
#
#     steps:
#     - uses: actions/checkout@v3
#
#     - name: Update Homebrew
#       run: brew update
#
#     - name: Install pandoc
#       run: |
#         for i in {1..3}
#         do
#           brew install pandoc && break || sleep 15
#         done
#
#     - name: Install gfortran and configure Makevars
#       run: |
#         brew install gcc
#         mkdir -p ~/.R
#         touch ~/.R/Makevars
#         echo "FC=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars
#         echo "F77=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars
#         echo "FLIBS=-L$(brew --prefix)/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars
#         echo "LDFLAGS=-L$(brew --prefix)/lib/gcc/current" >> ~/.R/Makevars
#
#     - name: Set up R ${{ matrix.r-version }}
#       uses: r-lib/actions/setup-r@v2
#       with:
#         r-version: ${{ matrix.r-version }}
#
#     - name: Install R dependencies
#       run: |
#         # 基礎包安裝
#         Rscript -e 'install.packages(c("remotes", "rcmdcheck", "reticulate", "renv", "knitr", "rmarkdown", "lsa", "purrr", "testthat"), repos="https://cran.r-project.org")'
#
#         # 根據 R 版本有條件地安裝 Matrix
#         Rscript -e '
#           if (getRversion() >= "4.4.0") {
#             install.packages("Matrix")
#           } else {
#             remotes::install_version("Matrix", version = "1.5.1", repos = "https://cran.r-project.org")
#           }
#         '
#
#         # 安裝指定版本的 htmltools
#         Rscript -e 'remotes::install_version("htmltools", version = "0.5.8")'
#
#         # 最後執行 renv::restore()
#         Rscript -e 'renv::restore()'
#
#     - name: Set up Python
#       uses: actions/setup-python@v2
#       with:
#         python-version: '3.10.x'
#
#     - name: Install Python virtualenv
#       run: pip install virtualenv
#
#     - name: Create Python virtual environment
#       run: virtualenv flair_env
#
#     - name: Install Python dependencies in virtual environment
#       run: |
#         source flair_env/bin/activate
#         pip install --upgrade pip
#         pip install scipy==1.12.0
#         pip install flair
#
#     - name: Remove Python cache files
#       run: find . -name '*.pyc' -delete
#
#     - name: Check (with virtual environment)
#       run: |
#         source flair_env/bin/activate
#         R CMD build --no-build-vignettes .
#       shell: bash


name: R-MacOS

on:
  push:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]

permissions:
  contents: read

jobs:
  build:
    runs-on: macos-latest
    strategy:
      matrix:
        r-version: ['4.4.0', '4.2.3']  # 改為 4.2.3
      fail-fast: false

    steps:
    - uses: actions/checkout@v3

    - name: Update Homebrew
      run: brew update

    - name: Install pandoc
      run: |
        for i in {1..3}
        do
          brew install pandoc && break || sleep 15
        done

    - name: Install gfortran and configure Makevars
      run: |
        brew install gcc
        mkdir -p ~/.R
        touch ~/.R/Makevars
        echo "FC=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars
        echo "F77=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars
        echo "FLIBS=-L$(brew --prefix)/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars
        echo "LDFLAGS=-L$(brew --prefix)/lib/gcc/current" >> ~/.R/Makevars

    - name: Set up R ${{ matrix.r-version }}
      uses: r-lib/actions/setup-r@v2
      with:
        r-version: ${{ matrix.r-version }}

    - name: Install R dependencies
      run: |
        # 首先安裝基礎包
        Rscript -e 'install.packages(c("remotes", "rcmdcheck", "reticulate", "renv"), repos="https://cran.r-project.org")'

        # 根據 R 版本安裝相應的 Matrix 版本
        Rscript -e '
          if (getRversion() >= "4.4.0") {
            remotes::install_version("Matrix", version = "1.5-3")
          } else if (getRversion() >= "4.2.0" && getRversion() < "4.3.0") {
            remotes::install_version("Matrix", version = "1.4-1")
          } else {
            remotes::install_version("Matrix", version = "1.5-1")
          }
        '

        # 安裝其他依賴
        Rscript -e 'install.packages(c("knitr", "rmarkdown", "lsa", "purrr", "testthat"), repos="https://cran.r-project.org")'

        # 安裝特定版本的 htmltools
        Rscript -e 'remotes::install_version("htmltools", version = "0.5.8")'

        # renv 相關操作
        Rscript -e '
          tryCatch({
            renv::restore()
          }, error = function(e) {
            message("Error in renv::restore(): ", e$message)
            if (!requireNamespace("Matrix", quietly = TRUE)) {
              if (getRversion() >= "4.4.0") {
                install.packages("Matrix")
              } else if (getRversion() >= "4.2.0" && getRversion() < "4.3.0") {
                remotes::install_version("Matrix", version = "1.4-1")
              } else {
                remotes::install_version("Matrix", version = "1.5-1")
              }
            }
          })
        '

    - name: Set up Python
      uses: actions/setup-python@v4  # 更新到 v4
      with:
        python-version: '3.10.x'
        cache: 'pip'

    - name: Install Python virtualenv
      run: pip install virtualenv

    - name: Create Python virtual environment
      run: virtualenv flair_env

    - name: Install Python dependencies in virtual environment
      run: |
        source flair_env/bin/activate
        pip install --upgrade pip
        pip install scipy==1.12.0
        pip install flair
        deactivate

    - name: Remove Python cache files
      run: find . -name '*.pyc' -delete

    - name: Check (with virtual environment)
      run: |
        source flair_env/bin/activate
        set -e
        R CMD build --no-build-vignettes .
      shell: bash