Update r_macos.yml

Author: davidycliao

.github/workflows/r_macos.yml

@@ -85,6 +85,101 @@
 #           source flair_env/bin/activate
 #           R CMD build --no-build-vignettes .
 #         shell: bash
+# name: R-MacOS
+#
+# on:
+#   push:
+#     branches: [ "main" ]
+#   pull_request:
+#     branches: [ "main" ]
+#
+# permissions:
+#   contents: read
+#
+# jobs:
+#   build:
+#     runs-on: macos-latest
+#     strategy:
+#       matrix:
+#         r-version: ['4.4.0', '4.3.2']
+#       fail-fast: false
+#
+#     steps:
+#     - uses: actions/checkout@v3
+#
+#     - name: Update Homebrew
+#       run: brew update
+#
+#     - name: Install pandoc
+#       run: |
+#         for i in {1..3}
+#         do
+#           brew install pandoc && break || sleep 15
+#         done
+#
+#     - name: Install gfortran and configure Makevars
+#       run: |
+#         brew install gcc
+#         mkdir -p ~/.R
+#         touch ~/.R/Makevars
+#         echo "FC=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars
+#         echo "F77=$(brew --prefix)/bin/gfortran" >> ~/.R/Makevars
+#         echo "FLIBS=-L$(brew --prefix)/lib/gcc/current -lgfortran -lquadmath -lm" >> ~/.R/Makevars
+#         echo "LDFLAGS=-L$(brew --prefix)/lib/gcc/current" >> ~/.R/Makevars
+#
+#     - name: Set up R ${{ matrix.r-version }}
+#       uses: r-lib/actions/setup-r@v2
+#       with:
+#         r-version: ${{ matrix.r-version }}
+#
+#     - name: Install R dependencies
+#       run: |
+#         # 基礎包安裝
+#         Rscript -e 'install.packages(c("remotes", "rcmdcheck", "reticulate", "renv", "knitr", "rmarkdown", "lsa", "purrr", "testthat"), repos="https://cran.r-project.org")'
+#
+#         # 根據 R 版本有條件地安裝 Matrix
+#         Rscript -e '
+#           if (getRversion() >= "4.4.0") {
+#             install.packages("Matrix")
+#           } else {
+#             remotes::install_version("Matrix", version = "1.5.1", repos = "https://cran.r-project.org")
+#           }
+#         '
+#
+#         # 安裝指定版本的 htmltools
+#         Rscript -e 'remotes::install_version("htmltools", version = "0.5.8")'
+#
+#         # 最後執行 renv::restore()
+#         Rscript -e 'renv::restore()'
+#
+#     - name: Set up Python
+#       uses: actions/setup-python@v2
+#       with:
+#         python-version: '3.10.x'
+#
+#     - name: Install Python virtualenv
+#       run: pip install virtualenv
+#
+#     - name: Create Python virtual environment
+#       run: virtualenv flair_env
+#
+#     - name: Install Python dependencies in virtual environment
+#       run: |
+#         source flair_env/bin/activate
+#         pip install --upgrade pip
+#         pip install scipy==1.12.0
+#         pip install flair
+#
+#     - name: Remove Python cache files
+#       run: find . -name '*.pyc' -delete
+#
+#     - name: Check (with virtual environment)
+#       run: |
+#         source flair_env/bin/activate
+#         R CMD build --no-build-vignettes .
+#       shell: bash
+
+
 name: R-MacOS
 
 on:
@@ -101,7 +196,7 @@ jobs:
     runs-on: macos-latest
     strategy:
       matrix:
-        r-version: ['4.4.0', '4.3.2']
+        r-version: ['4.4.0', '4.2.3']  # 改為 4.2.3
       fail-fast: false
 
     steps:
@@ -134,28 +229,49 @@ jobs:
 
     - name: Install R dependencies
       run: |
-        # 基礎包安裝
-        Rscript -e 'install.packages(c("remotes", "rcmdcheck", "reticulate", "renv", "knitr", "rmarkdown", "lsa", "purrr", "testthat"), repos="https://cran.r-project.org")'
+        # 首先安裝基礎包
+        Rscript -e 'install.packages(c("remotes", "rcmdcheck", "reticulate", "renv"), repos="https://cran.r-project.org")'
 
-        # 根據 R 版本有條件地安裝 Matrix
+        # 根據 R 版本安裝相應的 Matrix 版本
         Rscript -e '
           if (getRversion() >= "4.4.0") {
-            install.packages("Matrix")
+            remotes::install_version("Matrix", version = "1.5-3")
+          } else if (getRversion() >= "4.2.0" && getRversion() < "4.3.0") {
+            remotes::install_version("Matrix", version = "1.4-1")
           } else {
-            remotes::install_version("Matrix", version = "1.5.1", repos = "https://cran.r-project.org")
+            remotes::install_version("Matrix", version = "1.5-1")
           }
         '
 
-        # 安裝指定版本的 htmltools
+        # 安裝其他依賴
+        Rscript -e 'install.packages(c("knitr", "rmarkdown", "lsa", "purrr", "testthat"), repos="https://cran.r-project.org")'
+
+        # 安裝特定版本的 htmltools
         Rscript -e 'remotes::install_version("htmltools", version = "0.5.8")'
 
-        # 最後執行 renv::restore()
-        Rscript -e 'renv::restore()'
+        # renv 相關操作
+        Rscript -e '
+          tryCatch({
+            renv::restore()
+          }, error = function(e) {
+            message("Error in renv::restore(): ", e$message)
+            if (!requireNamespace("Matrix", quietly = TRUE)) {
+              if (getRversion() >= "4.4.0") {
+                install.packages("Matrix")
+              } else if (getRversion() >= "4.2.0" && getRversion() < "4.3.0") {
+                remotes::install_version("Matrix", version = "1.4-1")
+              } else {
+                remotes::install_version("Matrix", version = "1.5-1")
+              }
+            }
+          })
+        '
 
     - name: Set up Python
-      uses: actions/setup-python@v2
+      uses: actions/setup-python@v4  # 更新到 v4
       with:
         python-version: '3.10.x'
+        cache: 'pip'
 
     - name: Install Python virtualenv
       run: pip install virtualenv
@@ -169,12 +285,14 @@ jobs:
         pip install --upgrade pip
         pip install scipy==1.12.0
         pip install flair
+        deactivate
 
     - name: Remove Python cache files
       run: find . -name '*.pyc' -delete
 
     - name: Check (with virtual environment)
       run: |
         source flair_env/bin/activate
+        set -e
         R CMD build --no-build-vignettes .
       shell: bash