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runmefirst.sh
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runmefirst.sh
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#!/usr/bin/env bash
###########################################################################
#This script is part of the Kraken framework which aims to facilitate RNA
#sequence analysis in a streamlined and efficient manner.
#Copyright (C) 2011 2012 2013 EMBL - European Bioinformatics Institute
#This program is free software: you can redistribute it and/or modify
#it under the terms of the GNU General Public License as published by
#the Free Software Foundation, either version 3 of the License, or
#(at your option) any later version.
#This program is distributed in the hope that it will be useful,
#but WITHOUT ANY WARRANTY; without even the implied warranty of
#MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
#GNU General Public License for more details.
#You should have received a copy of the GNU General Public License
#along with this program (Please see the COPYING file for details).
#If not, see <http://www.gnu.org/licenses/>.
#Please send bug reports to:
#kraken@ebi.ac.uk
###########################################################################
echo -e "\nPerforming a system check to ensure all programmes are accessible.\n"
echo -e "\nChecking Perl:\n"
script_dir=$(dirname $0)
perl --version
echo -e "\nPerforming imp_commandline.pl system check:"
$script_dir/bin/imp_commandline.pl --system-check